CsaV3_3G022100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 19246943 .. 19247343 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCACTGTATTCACTGCACGTTAATAAATCATGGCTACACGAATTAAATGAAAAATCTTAGGGTCTAACTCGATCAACATAACCTAGATAGTCTAACGAAAAGAGTGATATTTTTTAAATATTAAATCCAACAATTTTCCATCAATTGTCAATAGAAACGAATCAAAATAGTTTGAAACGAAGTTTCGCGTTTCGCCCCAAATAATCAAACCCAAGGCGGTGCCTGACCTTAGGTTTCAGGGAATATCAATACTCTTCCAATTAACAGTCAAGAAATCGGAATCATTCGCTCGTCCCTCTAATTCGCTATTTCAAAGCGTTCTCCATCCGATTTTGCGTATAATTTTTGGAGTTTTTAAACCTCTGGTTGCTTCACCTCTGTTTCCAATTCAGGT

mRNA sequence

ATGGATTTCACTTTTGAAACGAAGTTTCGCGTTTCGCCCCAAATAATCAAACCCAAGGCGGTGCCTGACCTTAGGTTTCAGGGAATATCAATACTCTTCCAATTAACAGTCAAGAAATCGGAATCATTCGCTCGTCCCTCTAATTCGCTATTTCAAAGCGTTCTCCATCCGATTTTGCGTATAATTTTTGGAGTTTTTAAACCTCTGGTTGCTTCACCTCTGTTTCCAATTCAGGT

Coding sequence (CDS)

ATGGATTTCACTTTTGAAACGAAGTTTCGCGTTTCGCCCCAAATAATCAAACCCAAGGCGGTGCCTGACCTTAGGTTTCAGGGAATATCAATACTCTTCCAATTAACAGTCAAGAAATCGGAATCATTCGCTCGTCCCTCTAATTCGCTATTTCAAAGCGTTCTCCATCCGATTTTGCGTATAATTTTTGGAGTTTTTAAACCTCTGGTTGCTTCACCTCTGTTTCCAATTCAGGT

Protein sequence

MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILRIIFGVFKPLVASPLFPIQX
Homology
[Close]
BLAST of CsaV3_3G022100 vs. NCBI nr
Match: KGN57892.1 (hypothetical protein Csa_3G375710 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 9.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR 60
          MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR
Sbjct: 1  MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR 60

Query: 61 IIFGVFKPLVASPLFPIQ 79
          IIFGVFKPLVASPLFPIQ
Sbjct: 61 IIFGVFKPLVASPLFPIQ 78

[Close]
BLAST of CsaV3_3G022100 vs. TrEMBL
Match: tr|A0A0A0LB50|A0A0A0LB50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G375710 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.0e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR 60
          MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR
Sbjct: 1  MDFTFETKFRVSPQIIKPKAVPDLRFQGISILFQLTVKKSESFARPSNSLFQSVLHPILR 60

Query: 61 IIFGVFKPLVASPLFPIQ 79
          IIFGVFKPLVASPLFPIQ
Sbjct: 61 IIFGVFKPLVASPLFPIQ 78

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57892.19.1e-35100.00hypothetical protein Csa_3G375710 [Cucumis sativus][more]
BLAST of CsaV3_3G022100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB50|A0A0A0LB50_CUCSA6.0e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G375710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022100.1CsaV3_3G022100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022100Cucumber (Chinese Long) v3cuccucB073
CsaV3_3G022100Cucumber (Chinese Long) v3cuccucB110
CsaV3_3G022100Silver-seed gourdcarcucB0789
CsaV3_3G022100Silver-seed gourdcarcucB0816
CsaV3_3G022100Cucumber (Gy14) v2cgybcucB122
CsaV3_3G022100Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022100Cucumber (Gy14) v1cgycucB389
CsaV3_3G022100Cucurbita maxima (Rimu)cmacucB0621
CsaV3_3G022100Cucurbita maxima (Rimu)cmacucB0710
CsaV3_3G022100Cucurbita maxima (Rimu)cmacucB1054
CsaV3_3G022100Cucurbita moschata (Rifu)cmocucB0604
CsaV3_3G022100Cucurbita moschata (Rifu)cmocucB0696
CsaV3_3G022100Cucurbita pepo (Zucchini)cpecucB0304
CsaV3_3G022100Cucurbita pepo (Zucchini)cpecucB0902
CsaV3_3G022100Wild cucumber (PI 183967)cpicucB144
CsaV3_3G022100Wild cucumber (PI 183967)cpicucB152
CsaV3_3G022100Bottle gourd (USVL1VR-Ls)cuclsiB168
CsaV3_3G022100Bottle gourd (USVL1VR-Ls)cuclsiB236
CsaV3_3G022100Bottle gourd (USVL1VR-Ls)cuclsiB243
CsaV3_3G022100Melon (DHL92) v3.5.1cucmeB209
CsaV3_3G022100Melon (DHL92) v3.5.1cucmeB245
CsaV3_3G022100Melon (DHL92) v3.6.1cucmedB203
CsaV3_3G022100Melon (DHL92) v3.6.1cucmedB245
CsaV3_3G022100Watermelon (Charleston Gray)cucwcgB265
CsaV3_3G022100Watermelon (97103) v1cucwmB228
CsaV3_3G022100Watermelon (97103) v1cucwmB251
CsaV3_3G022100Watermelon (97103) v1cucwmB292
CsaV3_3G022100Watermelon (97103) v2cucwmbB215
CsaV3_3G022100Watermelon (97103) v2cucwmbB236
CsaV3_3G022100Watermelon (97103) v2cucwmbB245
CsaV3_3G022100Wax gourdcucwgoB286
CsaV3_3G022100Wax gourdcucwgoB309