CsaV3_3G021960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 19061445 .. 19061809 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTGAGAAAACTTCATCAGGAGACTTTTTGCCAACGACGCTAACAAGTGTCAAGAAGAGGGTTCGGCAACCTTCAAAGGGATCAAATGCAACGTACCAATCCAAAAATTTGGGGCATTTTGTGTTAGATTTTCACATGAAAGTATTGTGTGTGAATATTTGTGAGATACATATTTTATTAGAATAAGAAAAAACAAATGGTTATCATGGATTCAAAAAGACAAGATTTGAGAAAGAATGGGTTTAAAAGTATAAATGCTGTTTGTGTTGATTACTCGATGGTTTCAGAAGTTGAAAGCTATTCTGAACACTATTATTGACATTCCAATTGCTGTGTACAGAGCCATTAGTGAATCATAA

mRNA sequence

ATGGTTGTTGAGAAAACTTCATCAGGAGACTTTTTGCCAACGACGCTAACAAGTGTCAAGAAGAGGGTTCGGCAACCTTCAAAGGGATCAAATGCAACGTACCAATCCAAAAATTTGGGGCATTTTGTGTTAGATTTTCACATGAAAAAGTTGAAAGCTATTCTGAACACTATTATTGACATTCCAATTGCTGTGTACAGAGCCATTAGTGAATCATAA

Coding sequence (CDS)

ATGGTTGTTGAGAAAACTTCATCAGGAGACTTTTTGCCAACGACGCTAACAAGTGTCAAGAAGAGGGTTCGGCAACCTTCAAAGGGATCAAATGCAACGTACCAATCCAAAAATTTGGGGCATTTTGTGTTAGATTTTCACATGAAAAAGTTGAAAGCTATTCTGAACACTATTATTGACATTCCAATTGCTGTGTACAGAGCCATTAGTGAATCATAA

Protein sequence

MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIIDIPIAVYRAISES
Homology
[Close]
BLAST of CsaV3_3G021960 vs. NCBI nr
Match: KGN57859.1 (hypothetical protein Csa_3G354530 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 9.6e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID 60
          MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID
Sbjct: 1  MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID 60

Query: 61 IPIAVYRAISES 73
          IPIAVYRAISES
Sbjct: 61 IPIAVYRAISES 72

[Close]
BLAST of CsaV3_3G021960 vs. TrEMBL
Match: tr|A0A0A0LA58|A0A0A0LA58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354530 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID 60
          MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID
Sbjct: 1  MVVEKTSSGDFLPTTLTSVKKRVRQPSKGSNATYQSKNLGHFVLDFHMKKLKAILNTIID 60

Query: 61 IPIAVYRAISES 73
          IPIAVYRAISES
Sbjct: 61 IPIAVYRAISES 72

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57859.19.6e-31100.00hypothetical protein Csa_3G354530 [Cucumis sativus][more]
BLAST of CsaV3_3G021960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LA58|A0A0A0LA58_CUCSA6.4e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G354530 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021960.1CsaV3_3G021960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021960Wax gourdcucwgoB278
CsaV3_3G021960Silver-seed gourdcarcucB0575
CsaV3_3G021960Silver-seed gourdcarcucB1033
CsaV3_3G021960Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021960Cucumber (Gy14) v1cgycucB303
CsaV3_3G021960Cucurbita maxima (Rimu)cmacucB0384
CsaV3_3G021960Cucurbita maxima (Rimu)cmacucB0488
CsaV3_3G021960Cucurbita moschata (Rifu)cmocucB0381
CsaV3_3G021960Cucurbita moschata (Rifu)cmocucB0477
CsaV3_3G021960Cucurbita pepo (Zucchini)cpecucB0040
CsaV3_3G021960Cucurbita pepo (Zucchini)cpecucB0259
CsaV3_3G021960Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021960Wild cucumber (PI 183967)cpicucB153
CsaV3_3G021960Bottle gourd (USVL1VR-Ls)cuclsiB221
CsaV3_3G021960Melon (DHL92) v3.5.1cucmeB239
CsaV3_3G021960Melon (DHL92) v3.5.1cucmeB255
CsaV3_3G021960Melon (DHL92) v3.6.1cucmedB238
CsaV3_3G021960Melon (DHL92) v3.6.1cucmedB252
CsaV3_3G021960Watermelon (Charleston Gray)cucwcgB227
CsaV3_3G021960Watermelon (97103) v1cucwmB241
CsaV3_3G021960Watermelon (97103) v2cucwmbB208