CsaV3_3G021890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPeptidylprolyl isomerase
Locationchr3 : 19017773 .. 19018072 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTGTAGATTACAAAACCAAATAGCTAATTTCTCAATCTTATTCTATTCTAAAACGAACCCTTTTGGAAATAAGACATTGTAATTATAGGATTTTGCAGAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

mRNA sequence

ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

Coding sequence (CDS)

ATGCGTGTATCATTATACTGTCAATGCAGGGATGTGAAGATTGAATACAAACAACTAAAAGAGAAAGTGAGGGAATACACCAAGAGAGATGCACAGTTTTACAGCAACATTTTAGCAAAAATGAACAAATTGAAGCATGTTGAGTCTGGTAAATCAGGTGGAAAGCAAGGGGCAGAACCAATGATCATTGATAGCAAAACTTAA

Protein sequence

MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSKT
Homology
[Close]
BLAST of CsaV3_3G021890 vs. NCBI nr
Match: KGN57867.1 (hypothetical protein Csa_3G356080 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60
          MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60

Query: 61 MIIDSKT 68
          MIIDSKT
Sbjct: 61 MIIDSKT 67

[Close]
BLAST of CsaV3_3G021890 vs. NCBI nr
Match: XP_008439052.1 (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-15
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QLKEKV+EY KRDAQFY NI AKMNKL+H +S  SGGKQ   PM IDSK
Sbjct: 518 RDVKIEYRQLKEKVKEYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEGVPMTIDSK 574

[Close]
BLAST of CsaV3_3G021890 vs. NCBI nr
Match: XP_011651108.1 (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis sativus] >KGN57238.1 hypothetical protein Csa_3G172920 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 9.0e-15
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QL++KVREY KRDAQFY NI AKMNKL+H +S  SGGKQ A PM IDSK
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEAVPMTIDSK 574

[Close]
BLAST of CsaV3_3G021890 vs. NCBI nr
Match: XP_020112042.1 (LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Ananas comosus])

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDS 66
           +DVKIEYK LKEKV+EY KRDA+FY NI AK  KL+H+E+ K+ GKQ AEPM+IDS
Sbjct: 515 KDVKIEYKILKEKVKEYNKRDAKFYGNIFAKWGKLEHMEANKNSGKQVAEPMVIDS 570

[Close]
BLAST of CsaV3_3G021890 vs. NCBI nr
Match: XP_010023594.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 isoform X2 [Eucalyptus grandis] >KCW59903.1 hypothetical protein EUGRSUZ_H02629 [Eucalyptus grandis])

HSP 1 Score: 78.6 bits (192), Expect = 9.3e-12
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY KRDAQFY N+ AKMNKL+H  +   G K  A PM IDSK
Sbjct: 530 RDVKLEYKILKEKVREYNKRDAQFYGNMFAKMNKLEHSRTAGMGAKHEAAPMTIDSK 586

[Close]
BLAST of CsaV3_3G021890 vs. TAIR10
Match: AT5G48570.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           ++VKIEYK+LKEKV+EY K+DA+FYSN+L+KM     +E  K G ++ A+ M ID+K
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM-----LEPHK-GTQKEAQAMSIDTK 577

[Close]
BLAST of CsaV3_3G021890 vs. TAIR10
Match: AT3G25230.2 (rotamase FKBP 1)

HSP 1 Score: 43.5 bits (101), Expect = 6.0e-05
Identity = 18/36 (50.00%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLK 46
           R+VK+E K+LKEK++E+ K++A+FY N+ AK+  +K
Sbjct: 517 REVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLRIIK 552

[Close]
BLAST of CsaV3_3G021890 vs. Swiss-Prot
Match: sp|Q9FJL3|FKB65_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           ++VKIEYK+LKEKV+EY K+DA+FYSN+L+KM     +E  K G ++ A+ M ID+K
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM-----LEPHK-GTQKEAQAMSIDTK 577

[Close]
BLAST of CsaV3_3G021890 vs. Swiss-Prot
Match: sp|Q43207|FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVES 50
           RDVK+ YK LKEK++E  K+DA+FYSN+ +KM K    ES
Sbjct: 518 RDVKLTYKTLKEKIKEINKKDAKFYSNMFSKMTKPSAEES 557

[Close]
BLAST of CsaV3_3G021890 vs. Swiss-Prot
Match: sp|Q38931|FKB62_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana OX=3702 GN=FKBP62 PE=1 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 6.4e-04
Identity = 18/34 (52.94%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNK 44
           R+VK+E K+LKEK++E+ K++A+FY N+ AK++K
Sbjct: 517 REVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLSK 550

[Close]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match: tr|A0A0A0LB26|A0A0A0LB26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356080 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60
          MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEP 60

Query: 61 MIIDSKT 68
          MIIDSKT
Sbjct: 61 MIIDSKT 67

[Close]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match: tr|A0A1S3AXS5|A0A1S3AXS5_CUCME (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QLKEKV+EY KRDAQFY NI AKMNKL+H +S  SGGKQ   PM IDSK
Sbjct: 518 RDVKIEYRQLKEKVKEYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEGVPMTIDSK 574

[Close]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match: tr|A0A0A0L633|A0A0A0L633_CUCSA (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVKIEY+QL++KVREY KRDAQFY NI AKMNKL+H +S  SGGKQ A PM IDSK
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEAVPMTIDSK 574

[Close]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match: tr|A0A059B1A9|A0A059B1A9_EUCGR (Peptidylprolyl isomerase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02629 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.2e-12
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK LKEKVREY KRDAQFY N+ AKMNKL+H  +   G K  A PM IDSK
Sbjct: 530 RDVKLEYKILKEKVREYNKRDAQFYGNMFAKMNKLEHSRTAGMGAKHEAAPMTIDSK 586

[Close]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match: tr|A0A103Y0N7|A0A103Y0N7_CYNCS (Peptidylprolyl isomerase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021384 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 10  RDVKIEYKQLKEKVREYTKRDAQFYSNILAKMNKLKHVESGKSGGKQGAEPMIIDSK 67
           RDVK+EYK L+EKV+EY K+DA+FY NI AKMNKL+H++S     KQ A PM IDSK
Sbjct: 507 RDVKLEYKLLREKVKEYNKKDAEFYGNIFAKMNKLEHLDSANGARKQEAVPMTIDSK 563

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57867.14.9e-29100.00hypothetical protein Csa_3G356080 [Cucumis sativus][more]
XP_008439052.19.0e-1575.44PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo][more]
XP_011651108.19.0e-1575.44PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis sativus] >KGN57238.1 h... [more]
XP_020112042.18.4e-1369.64LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Ananas comosus][more]
XP_010023594.19.3e-1268.42PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 isoform X2 [Eucalyptus gra... [more]
BLAST of CsaV3_3G021890 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48570.11.2e-0854.39FKBP-type peptidyl-prolyl cis-trans isomerase family protein[more]
AT3G25230.26.0e-0550.00rotamase FKBP 1[more]
BLAST of CsaV3_3G021890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJL3|FKB65_ARATH2.1e-0754.39Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FK... [more]
sp|Q43207|FKB70_WHEAT2.6e-0557.5070 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=... [more]
sp|Q38931|FKB62_ARATH6.4e-0452.94Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana OX=3702 GN=FK... [more]
BLAST of CsaV3_3G021890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB26|A0A0A0LB26_CUCSA3.2e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356080 PE=4 SV=1[more]
tr|A0A1S3AXS5|A0A1S3AXS5_CUCME5.9e-1575.44Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1[more]
tr|A0A0A0L633|A0A0A0L633_CUCSA5.9e-1575.44Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1[more]
tr|A0A059B1A9|A0A059B1A9_EUCGR6.2e-1268.42Peptidylprolyl isomerase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02629 PE=4 S... [more]
tr|A0A103Y0N7|A0A103Y0N7_CYNCS8.0e-1264.91Peptidylprolyl isomerase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_02... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021890.1CsaV3_3G021890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021890Silver-seed gourdcarcucB0575
CsaV3_3G021890Silver-seed gourdcarcucB1033
CsaV3_3G021890Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021890Cucumber (Gy14) v1cgycucB303
CsaV3_3G021890Cucurbita maxima (Rimu)cmacucB0384
CsaV3_3G021890Cucurbita maxima (Rimu)cmacucB0488
CsaV3_3G021890Cucurbita moschata (Rifu)cmocucB0381
CsaV3_3G021890Cucurbita moschata (Rifu)cmocucB0477
CsaV3_3G021890Cucurbita pepo (Zucchini)cpecucB0040
CsaV3_3G021890Cucurbita pepo (Zucchini)cpecucB0259
CsaV3_3G021890Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021890Wild cucumber (PI 183967)cpicucB153
CsaV3_3G021890Bottle gourd (USVL1VR-Ls)cuclsiB221
CsaV3_3G021890Melon (DHL92) v3.5.1cucmeB239
CsaV3_3G021890Melon (DHL92) v3.6.1cucmedB238
CsaV3_3G021890Watermelon (Charleston Gray)cucwcgB227
CsaV3_3G021890Watermelon (97103) v1cucwmB241
CsaV3_3G021890Watermelon (97103) v2cucwmbB208
CsaV3_3G021890Wax gourdcucwgoB278