CsaV3_3G021740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G021740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 18873028 .. 18873613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTACAATCTCATTGCCAGTCTCATTGTAAGTTAACAAGTTGAGAAAATTTGGCAACTTATAATTTCCATTTTTTTTTTTGTTACTATGGTTTCACATCTTCTAATTTCCATTTCGTGCACTATTTTAGGACGATCTAATGGGCAACCAGAAGGGACGTAGTTTATCTGGTAGTGACGATGTTTTCACCCAGGCATTGGGAGGGAAAGATCGTCCGGGCATACTCCGAGGCGTGGGGAAGTACGTGACTAAGAAAAAATATTTCTATACCCCAATGGAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGGAACATGATCAAATGGCCAAACGAATTATCGAGCTAAAAGCGGAGTTGCATATAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGTATGTGTTCGAAAGGAACACCATCAATCGAATGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCAGACGTTGTGACATAA

mRNA sequence

ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTACAATCTCATTGCCAGTCTCATTGACGATCTAATGGGCAACCAGAAGGGACGTAGTTTATCTGGTAGTGACGATGTTTTCACCCAGGCATTGGGAGGGAAAGATCGTCCGGGCATACTCCGAGGCGTGGGGAAGTACGTGACTAAGAAAAAATATTTCTATACCCCAATGGAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGGAACATGATCAAATGGCCAAACGAATTATCGAGCTAAAAGCGGAGTTGCATATAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGTATGTGTTCGAAAGGAACACCATCAATCGAATGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCAGACGTTGTGACATAA

Coding sequence (CDS)

ATGGAAAAAAAATGTCATACATGGGACACAGGAAGTATTTGCCAAGACATCATCCATACAGATTACAATCTCATTGCCAGTCTCATTGACGATCTAATGGGCAACCAGAAGGGACGTAGTTTATCTGGTAGTGACGATGTTTTCACCCAGGCATTGGGAGGGAAAGATCGTCCGGGCATACTCCGAGGCGTGGGGAAGTACGTGACTAAGAAAAAATATTTCTATACCCCAATGGAATCTAAAGAAGGTAATGAGGAGAGGACAGTGTATGAGGAACATGATCAAATGGCCAAACGAATTATCGAGCTAAAAGCGGAGTTGCATATAATGAAAAAAGATGAGTGTGCGAAAGGAGATGAAGAAGAACAAGACCCTAGTATGTGTTCGAAAGGAACACCATCAATCGAATGGGTTTCAGATGATGAGACTGAAGACGTAGCCTCTGATTCAGTACCAGATAAAGCGGCAGACGTTGTGACATAA

Protein sequence

MEKKCHTWDTGSICQDIIHTDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPMESKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVPDKAADVVT

Homology

[Close]

BLAST of CsaV3_3G021740 vs. NCBI nr
Match: KGN57881.1 (hypothetical protein Csa_3G362650 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 3.6e-46
Identity = 105/128 (82.03%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 33  MGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPMESKEGNEERTVYEE 92
           MGNQKGRSLSG DDV TQALGGKD PGIL   GK                GNEERTVYEE
Sbjct: 1   MGNQKGRSLSGGDDVLTQALGGKDCPGILEAWGK----------------GNEERTVYEE 60

Query: 93  HDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP 152
            DQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP
Sbjct: 61  RDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP 112

Query: 153 DKAADVVT 161
           DKAADVVT
Sbjct: 121 DKAADVVT 112

[Close]

BLAST of CsaV3_3G021740 vs. NCBI nr
Match: KGN47213.1 (hypothetical protein Csa_6G211850 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 79  ESKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWV 138
           +SKEGNEERTVYE+ DQMA RIIEL+A+LH MKKDECAKGDEEEQDP MCSKGTPSIE V
Sbjct: 4   KSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSIEGV 63

Query: 139 SDDETE 145
           SDDETE
Sbjct: 64  SDDETE 69

[Close]

BLAST of CsaV3_3G021740 vs. NCBI nr
Match: KGN58276.1 (hypothetical protein Csa_3G604120 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 29 IDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTP--MESKEGNEE 88
          +D+L+ NQK R LSG D+V TQAL  KDR  I+R VGKYVTKKKYF+TP   +SK+ NE+
Sbjct: 21 VDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYVTKKKYFHTPTASKSKQSNEK 80

Query: 89 RTVY 91
          +TVY
Sbjct: 81 KTVY 84

[Close]

BLAST of CsaV3_3G021740 vs. NCBI nr
Match: OTF98104.1 (putative transposon, En/Spm-like, Transposase-associated domain protein [Helianthus annuus])

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 20  TDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPME 79
           +D  ++   ID L  +  G    G+ DV TQALG  ++ G +RG+GK+VT ++YFY P  
Sbjct: 665 SDVQVVVDRIDKLKESDSGEGTCGTHDVLTQALGTDEQRGHVRGMGKFVTPQQYFYLPNT 724

Query: 80  SKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVS 139
            K   +      E  +  KR+ +L+ EL  +K     KG     +   C  G   +E   
Sbjct: 725 VKHYMD-----TEKKKYDKRLNKLEDELEKLK-----KGVNNASEAESCQWGNEDLEDNP 784

Query: 140 DDETEDVASDSVPDKAADVV 160
           D+E  D++     D A+++V
Sbjct: 785 DEEPLDMSCFLAVDNASNIV 794

[Close]

BLAST of CsaV3_3G021740 vs. NCBI nr
Match: XP_022009752.1 (uncharacterized protein LOC110909049 [Helianthus annuus])

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-06
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 20  TDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPME 79
           +D  ++   ID L  +  G    G+ DV TQALG  ++ G +RG+GK+VT ++YFY P  
Sbjct: 565 SDVQVVVDRIDKLKESDSGEGTCGTHDVLTQALGTDEQRGHVRGMGKFVTPQQYFYLPNT 624

Query: 80  SKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVS 139
            K   +      E  +  KR+ +L+ EL  +K     KG     +   C  G   +E   
Sbjct: 625 VKHYMD-----TEKKKYDKRLNKLEDELEKLK-----KGVNNASEAESCQWGNEDLEDNP 684

Query: 140 DDETEDVASDSVPDKAADVV 160
           D+E  D++     D A+++V
Sbjct: 685 DEEPLDMSCFLAVDNASNIV 694

[Close]

BLAST of CsaV3_3G021740 vs. TrEMBL
Match: tr|A0A0A0LCT7|A0A0A0LCT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G362650 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.4e-46
Identity = 105/128 (82.03%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 33  MGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPMESKEGNEERTVYEE 92
           MGNQKGRSLSG DDV TQALGGKD PGIL   GK                GNEERTVYEE
Sbjct: 1   MGNQKGRSLSGGDDVLTQALGGKDCPGILEAWGK----------------GNEERTVYEE 60

Query: 93  HDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP 152
            DQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP
Sbjct: 61  RDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVSDDETEDVASDSVP 112

Query: 153 DKAADVVT 161
           DKAADVVT
Sbjct: 121 DKAADVVT 112

[Close]

BLAST of CsaV3_3G021740 vs. TrEMBL
Match: tr|A0A0A0KCE4|A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.1e-22
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 79  ESKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWV 138
           +SKEGNEERTVYE+ DQMA RIIEL+A+LH MKKDECAKGDEEEQDP MCSKGTPSIE V
Sbjct: 4   KSKEGNEERTVYEQRDQMANRIIELEAKLHRMKKDECAKGDEEEQDPRMCSKGTPSIEGV 63

Query: 139 SDDETE 145
           SDDETE
Sbjct: 64  SDDETE 69

[Close]

BLAST of CsaV3_3G021740 vs. TrEMBL
Match: tr|A0A0A0LDV4|A0A0A0LDV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G604120 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-12
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 29 IDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTP--MESKEGNEE 88
          +D+L+ NQK R LSG D+V TQAL  KDR  I+R VGKYVTKKKYF+TP   +SK+ NE+
Sbjct: 21 VDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYVTKKKYFHTPTASKSKQSNEK 80

Query: 89 RTVY 91
          +TVY
Sbjct: 81 KTVY 84

[Close]

BLAST of CsaV3_3G021740 vs. TrEMBL
Match: tr|A0A251SGZ8|A0A251SGZ8_HELAN (Putative transposon, En/Spm-like, Transposase-associated domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0441971 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 20  TDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPME 79
           +D  ++   ID L  +  G    G+ DV TQALG  ++ G +RG+GK+VT ++YFY P  
Sbjct: 665 SDVQVVVDRIDKLKESDSGEGTCGTHDVLTQALGTDEQRGHVRGMGKFVTPQQYFYLPNT 724

Query: 80  SKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVS 139
            K   +      E  +  KR+ +L+ EL  +K     KG     +   C  G   +E   
Sbjct: 725 VKHYMD-----TEKKKYDKRLNKLEDELEKLK-----KGVNNASEAESCQWGNEDLEDNP 784

Query: 140 DDETEDVASDSVPDKAADVV 160
           D+E  D++     D A+++V
Sbjct: 785 DEEPLDMSCFLAVDNASNIV 794

[Close]

BLAST of CsaV3_3G021740 vs. TrEMBL
Match: tr|A0A251TR15|A0A251TR15_HELAN (Putative transposase, Ptta/En/Spm, plant OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0317551 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 42/140 (30.00%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 20  TDYNLIASLIDDLMGNQKGRSLSGSDDVFTQALGGKDRPGILRGVGKYVTKKKYFYTPME 79
           +D  ++   ID L  +  G    G+ DV TQALG  ++ G +RG+GK+VT ++YFY P  
Sbjct: 218 SDVQVVVDKIDKLKESDSGEGTCGTHDVLTQALGTDEQRGHVRGMGKFVTPQQYFYLPNT 277

Query: 80  SKEGNEERTVYEEHDQMAKRIIELKAELHIMKKDECAKGDEEEQDPSMCSKGTPSIEWVS 139
            K   +      E  +  KR+ +L+ EL  +K     +G     +   C  G   +E   
Sbjct: 278 VKHYMD-----TEKKKYDKRLNKLEDELEKLK-----RGVNNVSEAESCQWGNEDLEDNP 337

Query: 140 DDETEDVASDSVPDKAADVV 160
           D+E  D++     D A+++V
Sbjct: 338 DEEPLDMSCFLAVDNASNIV 347

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57881.1	3.6e-46	82.03	hypothetical protein Csa_3G362650 [Cucumis sativus]	[more]
KGN47213.1	1.4e-21	86.36	hypothetical protein Csa_6G211850 [Cucumis sativus]	[more]
KGN58276.1	5.8e-12	62.50	hypothetical protein Csa_3G604120 [Cucumis sativus]	[more]
OTF98104.1	8.1e-06	30.71	putative transposon, En/Spm-like, Transposase-associated domain protein [Heliant...	[more]
XP_022009752.1	8.1e-06	30.71	uncharacterized protein LOC110909049 [Helianthus annuus]	[more]

BLAST of CsaV3_3G021740 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCT7\|A0A0A0LCT7_CUCSA	2.4e-46	82.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G362650 PE=4 SV=1	[more]
tr\|A0A0A0KCE4\|A0A0A0KCE4_CUCSA	9.1e-22	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1	[more]
tr\|A0A0A0LDV4\|A0A0A0LDV4_CUCSA	3.8e-12	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G604120 PE=4 SV=1	[more]
tr\|A0A251SGZ8\|A0A251SGZ8_HELAN	5.4e-06	30.71	Putative transposon, En/Spm-like, Transposase-associated domain protein OS=Helia...	[more]
tr\|A0A251TR15\|A0A251TR15_HELAN	1.6e-05	30.00	Putative transposase, Ptta/En/Spm, plant OS=Helianthus annuus OX=4232 GN=HannXRQ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021740.1	CsaV3_3G021740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..160

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G021740	Silver-seed gourd	carcucB0575
CsaV3_3G021740	Silver-seed gourd	carcucB1033
CsaV3_3G021740	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G021740	Cucumber (Gy14) v1	cgycucB303
CsaV3_3G021740	Cucurbita maxima (Rimu)	cmacucB0384
CsaV3_3G021740	Cucurbita maxima (Rimu)	cmacucB0488
CsaV3_3G021740	Cucurbita moschata (Rifu)	cmocucB0381
CsaV3_3G021740	Cucurbita moschata (Rifu)	cmocucB0477
CsaV3_3G021740	Cucurbita pepo (Zucchini)	cpecucB0040
CsaV3_3G021740	Cucurbita pepo (Zucchini)	cpecucB0259
CsaV3_3G021740	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G021740	Wild cucumber (PI 183967)	cpicucB153
CsaV3_3G021740	Bottle gourd (USVL1VR-Ls)	cuclsiB239
CsaV3_3G021740	Melon (DHL92) v3.5.1	cucmeB239
CsaV3_3G021740	Melon (DHL92) v3.6.1	cucmedB238
CsaV3_3G021740	Watermelon (Charleston Gray)	cucwcgB227
CsaV3_3G021740	Watermelon (97103) v1	cucwmB241
CsaV3_3G021740	Watermelon (97103) v2	cucwmbB208
CsaV3_3G021740	Wax gourd	cucwgoB278