CsaV3_3G021520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 18517830 .. 18521657 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTATATTCTTGACGTTTAAAAAACGTCAAGTTTTATTAAATAAAAAAAAGGGAAAGGCACCGTTTTCAAGATTGTCGTGCTTTGCCCTAAAAATCCCAATTTCCAAATTTCCCAATTTCGCATCGTCTTCTTCTTCTTCGTAATTTCTCAATTTCGAATCATCTTCTTCTTCTTCACGGCTAAGTATTCAAAATCTTCATCTTCTTCTTCACGCTTGAGCTTCCGAAATCTTCTTCTCCACGTCGTCGTTCGCCACGCTGCCGTCTCTTCACGCTTCTCCGTCTTTGAAAAGTAACCATCGATCCTTCACTCCTTTCGTCTTCGCCGTTCTTGACATTGGGGAAGCCCTATCCCTCTCTCGTTTTTGAAGACATTCAAAATTTGTTTTCACACTCGTTCGAAATCACCATTCAAAATCACCACCGGGGATTAATTTCATCTCTTCACGCCTATCTCTTCGCACTCGATCTCTTCATTCTGAAAAATCCGTTGATTGAAGTCCTCCAAACAAACACATTTTGTTCTCTGCCACAAACTGAATTAGGTGCGTTGTTCTATTAAATTGATGCTTTAAAACTGATTTGGATGCTTATGAAATTGTCTTGATTTTTTTAGTTTTATGGTTTCTTCAAGATTGGAATCTATGTTTAGTGTATGGTTGATTAGAATGAAGCATATATATTCTATTCTAAAGTTAAAATGAAGCACTGAGTTTCTGATCCGGAAGCTTCCGTTTAAACGTTTAGTTTGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCTAGAGCAGTGTCGTCGCGACGCTTCAGGAGGCGGCCGAAGCCTATTTGGTTGGTCTGTTTGAGGATACGAATCTTTGTGCTATTCATGCTAAGAGGATAACCATTATGCCTAAGGACATTCAATTGGCAAGGAGGATTAGAGGGGAAGGGGCTTAGAGGGATTGGCTTGATTATTGTGTTTTTAGTTTTTTACTTTCTAAGTGCTTTTTGTGTCTCTAGATTTAGTCTATGGTGTAAATCTACTGTGTTTTGATATCCTGTCCCATGAGTATATCGTAGGTCACATGTATATGAGACTCAACAATATGTTTGCTAAATGAATTATCTCTTTACATTTATTATCTCTGTCTAAATTTGTTGCTTTCAAATGGTATGTTTAAATATTATTTTGTTGTTGTTCTAGTGAAGTCGTAAGTTCAATTATGTTTTACCCTTTCTTGGGTTCCTATATTTTGATAATCTGAATCAAGTTTTCGTTAACAACAATCTCTGATGTTTCACTACATTGGTTTGTTGGTGTATGAAGATTGGGACTGTTATTGATTGAAGCCTAAGGTTGGATTATTCTTGGGCTGAAACAGTCACTTGTTAGAAGGTTTCATTGATATCTCTAATGAAAGTTTTAGTTTAGAATATAAAATTTTGGGATGCCTCATGTATATACCTTGATTTTCTTGACTTCCTCAAGACTTTGAGGTATTGCATCGACACATTGTTTCACCAATCAGGTGCTTTCCTTCTGTTTCACCTACACATAAACACAATTTTTGCAATTTCTGACATGCATAAAAAAAAGAAAAGTAGAGAAACCTCATAAAATACATAGATAGAAAGAGAAACAAAAAGTTGCATACTGCATTTGCAAGTGGATACTGTGTTAGGAAGATAGTGTAAGAAAGCTTGACTTACTCCCAATATAAGCAACATCACTAGAATAGAATATACATGCTTCATTTTAACTTTAAAATTTTATATGTTTTTTTTTTTAACTTTAGAAGTTAATTATCATTTTAACTTTCTATATCTTCTTGATTGTGATAAGGCACATGGATACCTACATAATATTATAATGGTTTGTTTTACAGTTCTCAAACTAATAGTACCATAAGTTTATTATGCCCATTCATCTCAATTGATTAGTTTTTAATTTTGTTTAAAACTTGTATACTATGCTAATTGTTTCTTGATTTTGATTGATAGCCTTTGATTCATACATCACATGGACAATTTAACTAACAAAGAACTTGGTGTTGATGAGTTGAATGCAATATTTGGAATTGAGGATGATGAACATATTGGTACTGAAAATGAAACCTCAAAGCAAACATGAGACCATGAGGACCAACTATTATGTTTGATGTAACTCGCATTAGAAGTTTGGGAGAGAAGAAGGTGGTTGTGTGAAACTTTACATTGGTGGCCTATATGACGTAAGTCAATTTCATTTGTTTAGATCTAAATATATGTATCTCATTTACGAGTTTATAATATTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTACTGTACGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACTCACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGGTAAGTCAAGTTATTTTATTAGTTGCATTGCAAAAAACTAGTACTAATATTTTGTAGTATTAGGGGTCATTGGGCACTGCTGGCCATATGCGTATGATGGTACAATATTCTACCTTGACTCACTAAGGACAACATCGAAGTCAACTACAAGATATATAACCAACACATAAGTTAATCTTCTATATCATTTAGTGAAGATTCTTATATGCATGTACAATATTTAAAAATTCGTTCAGTCTTATATCTTGTCAAAACAGAGCAATAGCGATGTTTCAGTCACAAAAGGACATTAAGAAAAGTAGAAAACAAACTTTATGGCGAACAGTAAAGGCAAGTACAAACATTTAAAGTCATTATATTTTGTAGACTACTAGCAATTAGGATTACTTCGTTATTCAAATTTGTTGATTTTATATAGTGTCCTCTACAAGTCGAGAGTACTGAGTGTGGATACTACGTCATGAGGTATAGGAGAGAAATTGTGACTAGGGGAAGCATTGTCATATCTGATGCGGTATATATCAAACAATTTCTTTTATGAGTCAATTGGTTTATTTGTATAGTGAGTCAATTCATTTAATTTATTTTGCATGTTTATAGATTGATACACGAAGATCACACTCACAGGCAGAACTAGATGAGGTATGAGTTGAGTTAGCTGACTTTCTGGGTTCGTACATATGATTGTGACCAATAATTTGTGATTCTGAAGTAGGAATTTTTTGTTGTGGCGCTGCTTATGATCTGAAACTTTATGTATAGAAACTTTAGGTGATAATTCTTTTGAATTGTTCATATGGGGGAGGAGGGGGGTTGATTGGTATACTTTTTATTAGATTTATTATAGCTATCCTCTTTTGTGACTCTCTAAGTTGAGTTGGATTCATGGCAATCTAATGAAATATTCATATCTATGTATAGTCATGAAATATTCATATCCATGTAAAGTCTTCGAATTGATTGTATATGATATATGGAGAATGGTTTTATATATTCATATATGTTCGAGTTTTG

mRNA sequence

ATGACGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTACTGTACGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACTCACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGTATTAGGGGTCATTGGGCACTGCTGGCCATATGCGTATGA

Coding sequence (CDS)

ATGACGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTACTGTACGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACTCACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGTATTAGGGGTCATTGGGCACTGCTGGCCATATGCGTATGA

Protein sequence

MTYLYSSVLGSKENVLYVFVDSSLTSVEHSQESRVRNLCSRLMLSKSNEIVFAPFNPGIRGHWALLAICV
Homology
[Close]
BLAST of CsaV3_3G021520 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1   MTYLYSSVLGSKENVLYVFVDSSLTSVEHSQESRVRNLCSRLMLSKSNEIVFAPFNPGI 60
           MTYLYS++LGSKENV Y+F+D SLTS  HSQESRVRNLCSRLM+SKSNEIV APFNPG+
Sbjct: 76  MTYLYSAILGSKENVQYIFIDPSLTSTGHSQESRVRNLCSRLMVSKSNEIVLAPFNPGL 134

[Close]
BLAST of CsaV3_3G021520 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1   MTYLYSSVLGSKENVLYVFVDSSLTSVEH-SQESRVRNLCSRLMLSKSNEIVFAPFNPGI 60
           MTYL+S  + +     Y+FV  SL SV H +QE R RNL SRLM SK N++V APFNPGI
Sbjct: 296 MTYLHSQDVSN-----YIFVFPSLISVGHDTQEVRARNLSSRLMASKPNQLVLAPFNPGI 350

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011657210.18.2e-1981.36PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
XP_011656204.11.0e-0556.67PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
BLAST of CsaV3_3G021520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021520 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021520.1CsaV3_3G021520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021520Wax gourdcucwgoB296
CsaV3_3G021520Silver-seed gourdcarcucB0801
CsaV3_3G021520Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021520Cucumber (Gy14) v1cgycucB303
CsaV3_3G021520Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G021520Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G021520Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G021520Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G021520Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G021520Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G021520Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021520Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G021520Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G021520Melon (DHL92) v3.6.1cucmedB247
CsaV3_3G021520Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G021520Watermelon (97103) v1cucwmB254
CsaV3_3G021520Watermelon (97103) v2cucwmbB220