CsaV3_3G021510 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G021510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 18512272 .. 18513411 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCATCCATTTCCACAAGATTAATCTTCTATTCTCCATTTTCTAGTGACCAATATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGGTACGTATTGAAGAATATTATTTTCCGTTTGTATATATGTATGTATGCATATATCACGTATGCATGTATTCTAATTCTTTATTTGTGTATTTACAGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGATGTTGGCGGGCCTCAAACTGGTCATCCCACCCCCTCCTCCACACCATCATCTTGATTCTGACATAGGTGGTCTGCAAATGATCATTCCACCCCCTCTACCACACCATCATCTTGATTCTGATGTTGACAACCCTCAAATGGTTATTCCCCCTCCTCCACTTCATCACATTCGCCTTTAAAATCGAACATCGTTGATAATCCCCCAATGGTCATCCCACCGCCTCCCCTCTATTATGTTCCATCCACAAAGTAATGTTTAGTGATATTATAACGATAATCCCCTACCTCCTCTATAAAGCAACTTTTATTGCATCCAATTCGATCACAACTTTAGATGTCTGATTCATTTCTTGTCACTTCCCTTGAAGTATTGAGCATAATAAGCTAATAATAATAATAATACTTACGATTATAAATATTATATGTCCATGCATATATATAGTGTATTTAGAAACAAGCTTTCACTCCCC

mRNA sequence

ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA

Coding sequence (CDS)

ATGGAGAAAACACAAAGAATTTATCTTCTCTTTCTATCGCTTTTATCCATAGCCACAATGTCACATTGTCGTGTGTTGCTTCATGTTGACCCACAATCTGATGTTGGCGGACCTCAAATGGTCATTCCACCCCGTCCGCCACACCATCATCTTGATTCAGACGTTGGTGGACCACAGATGGTCATTCCACCACCTCCACCACACCATCATCTTGATTCCGATGTTGGCGGCCCTCAAATGGTTATCCCTCCTCCTCCACCGCACAAGCTTCCACAATCCGATGTTGGTGGCCCTCAATTGGTCATTCCACCCCCTCCACCACACCATCATCTTAATTCGGACGTTGGTGGCCCTCAAATGGTCATCCCACCACCTCCTCCGCACAAACATCCACAATCTGATGTTGGCGGTCCTCAAATGGTCATTCCACCCCCTCCTCCACACCATCATCTTGATTCTGATGTTGGTGGCCCTCAAATGGTCATTCCACCACCTCCCGCACAAACATCCACAATCTGA

Protein sequence

MEKTQRIYLLFLSLLSIATMSHCRVLLHVDPQSDVGGPQMVIPPRPPHHHLDSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQLVIPPPPPHHHLNSDVGGPQMVIPPPPPHKHPQSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPAQTSTI
BLAST of CsaV3_3G021510 vs. NCBI nr
Match: XP_011648489.1 (PREDICTED: carboxypeptidase Y-like [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 20 MSHCRVLLHVDPQSDVGGPQMVIPPRPPHHH 51
          MSHC VLLHV  QSDVGGPQMVIPP P H+H
Sbjct: 1  MSHCCVLLHVGSQSDVGGPQMVIPPPPSHNH 31

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011648489.11.6e-0480.65PREDICTED: carboxypeptidase Y-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021510.1CsaV3_3G021510.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..172

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None