CsaV3_3G021500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 18507399 .. 18508517 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCCTCAATTCGCTAGTATATAGCCAGGCTTTAGTATAACCTACACCCAGTCTAAACGACAACCACAAGTTCACATCCACGTCTCATACAAACACAATCTAAAAGTCTAGTCCTATCTACATCCACATATATATACATATTCCCAGATAATCACGACATACATTCATCATCAAGTCTCCGTCAATCCATGTACATATATTTTCAGTCATTTACAGTATACATTCAATACCAAGTTTACATCCACGCATATATATCATTTTGACAACTCTACTCAATCAGAGGTAACTATACAGTCAGTTCAAAACTATAGGTGAGCCCAGTAGTAGAGAATCCCTAACCTCGAGTTAGGGAAGCTCCTTAATCAACTAAGGTCCACGAAAAAAATCCTAAGCATAACCATAAGAAATTCAATTATTTTCATAAACTTTCTCTGATTTAGTTTCCTCAATGAAACTCCTACACTTACTTGAGTATTAGTGAAATCGAACTTCAACCAAGATCTAAAATGTGTTGTGCGTCCAAAGGATTTAAACGCTACCTTATTGAACAACAATTCAACAATTACCCAACAATAATACTTGAATTAATATGAAACAACTACCAACCCACAACTTAAATCTTGTTTTTTGGAACACACGGCTGAAAGGCAGGGGTCGCGCGGCGGCTGGAAGGCAGAGGGTCACGTGGCGGCTGGACTTCACGAACGGAGACCAGCGCAGACGTAGCCGGACGAAGGTATGGACGAACGGCAAGGTGAGAGCGGACGCGACGCCGGTGACACCAACCGACGACGACGACGACGTTCAGCTTCAATGGAAGACCGAGACAATCGGCGGTCGGCTGCAGATCTGAAAGGAAAAGAAAAGGAAAAGGAAAAAGAAAGATAGGGGAGGCTATGGAGGCTAGGGTATGAGGATGAAGTAGGAGAAGAAGAGGAAAAAAAAAAGAAGGAAGAAGACGGGGAAGGGTCACGCGAGAGAGAGGAAGAGAGAGAAATTTTAATTTCTTTTTTTTATAAATTAATAATTAATAGTAATAATATTTATATTATTATTATTATTATTACATTTTCTTCCCTCACTTCTTTTCTTTTCCAATAATTAAATTTTTCTTCCGA

mRNA sequence

ATGAAACAACTACCAACCCACAACTTAAATCTTGTTTTTTGGAACACACGGCTGAAAGGCAGGGGTCGCGCGGCGGCTGGAAGGCAGAGGGTCACGTGGCGGCTGGACTTCACGAACGGAGACCAGCGCAGACGTAGCCGGACGAAGGTATGGACGAACGGCAAGGTGAGAGCGGACGCGACGCCGGTGACACCAACCGACGACGACGACGACGTTCAGCTTCAATGGAAGACCGAGACAATCGGCGGTCGGCTGCAGATCTGA

Coding sequence (CDS)

ATGAAACAACTACCAACCCACAACTTAAATCTTGTTTTTTGGAACACACGGCTGAAAGGCAGGGGTCGCGCGGCGGCTGGAAGGCAGAGGGTCACGTGGCGGCTGGACTTCACGAACGGAGACCAGCGCAGACGTAGCCGGACGAAGGTATGGACGAACGGCAAGGTGAGAGCGGACGCGACGCCGGTGACACCAACCGACGACGACGACGACGTTCAGCTTCAATGGAAGACCGAGACAATCGGCGGTCGGCTGCAGATCTGA

Protein sequence

MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADATPVTPTDDDDDVQLQWKTETIGGRLQI
Homology
[Close]
BLAST of CsaV3_3G021500 vs. NCBI nr
Match: KGN57822.1 (hypothetical protein Csa_3G331320 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.0e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA 60
          MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA
Sbjct: 1  MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA 60

Query: 61 TPVTPTDDDDDVQLQWKTETIGGRLQI 88
          TPVTPTDDDDDVQLQWKTETIGGRLQI
Sbjct: 61 TPVTPTDDDDDVQLQWKTETIGGRLQI 87

[Close]
BLAST of CsaV3_3G021500 vs. TrEMBL
Match: tr|A0A0A0LAX6|A0A0A0LAX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G331320 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA 60
          MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA
Sbjct: 1  MKQLPTHNLNLVFWNTRLKGRGRAAAGRQRVTWRLDFTNGDQRRRSRTKVWTNGKVRADA 60

Query: 61 TPVTPTDDDDDVQLQWKTETIGGRLQI 88
          TPVTPTDDDDDVQLQWKTETIGGRLQI
Sbjct: 61 TPVTPTDDDDDVQLQWKTETIGGRLQI 87

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57822.12.0e-43100.00hypothetical protein Csa_3G331320 [Cucumis sativus][more]
BLAST of CsaV3_3G021500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAX6|A0A0A0LAX6_CUCSA1.3e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G331320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021500.1CsaV3_3G021500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..70

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021500Wax gourdcucwgoB296
CsaV3_3G021500Silver-seed gourdcarcucB0801
CsaV3_3G021500Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021500Cucumber (Gy14) v1cgycucB303
CsaV3_3G021500Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G021500Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G021500Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G021500Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G021500Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G021500Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G021500Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021500Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G021500Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G021500Melon (DHL92) v3.6.1cucmedB247
CsaV3_3G021500Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G021500Watermelon (97103) v1cucwmB254
CsaV3_3G021500Watermelon (97103) v2cucwmbB220