CsaV3_3G021440 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G021440
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 18429121 .. 18429330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

mRNA sequence

ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

Coding sequence (CDS)

ATGAAGAACACCTCTTTGCCTGATGCTGATTTTAAAGGTTTAGCCGAAGGGACTCAAGAAAGATCAACAAAAGAAATTTGGATCCTTAAAGAAAGAGGTAGAAGAAAGTCGAAGGTGGAGGAAGAAATCTTCGAGGAGTTTGAGAAAGGGGTTAAAAGAAACTACTTGTCGAAGGAGAAAGTGTCCAAATGCAAGAAGAGAAGAAGATAA

Protein sequence

MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEKVSKCKKRRR

Homology

[Close]

BLAST of CsaV3_3G021440 vs. NCBI nr
Match: KGN57829.1 (hypothetical protein Csa_3G335350 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60
          MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK
Sbjct: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60

Query: 61 VSKCKKRRR 70
          VSKCKKRRR
Sbjct: 61 VSKCKKRRR 69

[Close]

BLAST of CsaV3_3G021440 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+ TS PDADF GLA  T  RSTKEI + + R +    ++KV +++ EEFEK   RN LS
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 KEKVSKCKK 67
          +EKV  CKK
Sbjct: 61 EEKVPNCKK 69

[Close]

BLAST of CsaV3_3G021440 vs. NCBI nr
Match: KGN54001.1 (hypothetical protein Csa_4G255430 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-04
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92

Query: 61  KEKVSKCKKRRR 70
           +E+VS C K R+
Sbjct: 93  EEEVSICNKGRQ 104

[Close]

BLAST of CsaV3_3G021440 vs. TrEMBL
Match: tr|A0A0A0LA28|A0A0A0LA28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G335350 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60
          MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK
Sbjct: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRRKSKVEEEIFEEFEKGVKRNYLSKEK 60

Query: 61 VSKCKKRRR 70
          VSKCKKRRR
Sbjct: 61 VSKCKKRRR 69

[Close]

BLAST of CsaV3_3G021440 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
          M+ TS PDADF GLA  T  RSTKEI + + R +    ++KV +++ EEFEK   RN LS
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 KEKVSKCKK 67
          +EKV  CKK
Sbjct: 61 EEKVPNCKK 69

[Close]

BLAST of CsaV3_3G021440 vs. TrEMBL
Match: tr|A0A0A0L1L9|A0A0A0L1L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MKNTSLPDADFKGLAEGTQERSTKEIWILKERGRR---KSKVEEEIFEEFEKGVKRNYLS 60
           ++NTSL + DFKGLA+ TQ   TKEIW L  R +    + KV EE  +EFEK   RN L 
Sbjct: 33  VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKVNEEATKEFEKERDRNNLL 92

Query: 61  KEKVSKCKKRRR 70
           +E+VS C K R+
Sbjct: 93  EEEVSICNKGRQ 104

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57829.1	4.3e-28	100.00	hypothetical protein Csa_3G335350 [Cucumis sativus]	[more]
KGN65003.1	1.7e-05	52.17	hypothetical protein Csa_1G173720 [Cucumis sativus]	[more]
KGN54001.1	2.5e-04	50.00	hypothetical protein Csa_4G255430 [Cucumis sativus]	[more]

BLAST of CsaV3_3G021440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LA28\|A0A0A0LA28_CUCSA	2.8e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G335350 PE=4 SV=1	[more]
tr\|A0A0A0LTC4\|A0A0A0LTC4_CUCSA	1.2e-05	52.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
tr\|A0A0A0L1L9\|A0A0A0L1L9_CUCSA	1.7e-04	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021440.1	CsaV3_3G021440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G021440	Silver-seed gourd	carcucB0801
CsaV3_3G021440	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G021440	Cucumber (Gy14) v1	cgycucB303
CsaV3_3G021440	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G021440	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G021440	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G021440	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G021440	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G021440	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G021440	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G021440	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G021440	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G021440	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G021440	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G021440	Watermelon (97103) v1	cucwmB254
CsaV3_3G021440	Watermelon (97103) v2	cucwmbB220
CsaV3_3G021440	Wax gourd	cucwgoB296