CsaV3_3G021370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGag protease polyprotein
Locationchr3 : 18306314 .. 18307555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCAAGGGAAGAAGTACGTAGAGGAGGTCGTAGAGGCCGAGGTAGAGGAGCAGGAGGCCGAGGTAGAGGAGTAGGTCGTAATCAGCCTACTGAGGGTCAAGCTGAACATCGAATTCCTGCTGCACCCGTGACTCACGTCGAGTTTGATGCACTGTCTGCTCACATGGAGCAGAGGTTTACAGAACTTATGACAGCCATAGCTCAAAACCAGCAGGCACCTGCAGTCCCACCTGCACCTGTAGTTCCCCCTGCACCAGCAGCCCCTCCTGCACAAGAATTACCTAACCAACTTTCTGCTGAGGCGAAACATTTGAGGGACTTTCGGAAGTATGACCCTCAGACGTTTGATGGGTCACTGGAGGATCCTACTAAAGCTGAAATGTGGTTGTCCTCTGTGGAAACCATATTTAATTACATGAGATGTCCTGAGGAGCACAGAGTTCAGTGTGCTGCTTTTCTACTGAGGGACAGAGGCATTATCTGGTGGAGGACTACCATGCGCATGCTAGGTGGAGATGTGAGGCAGATTACCTGGGATCAGTTTAAGGACTGCTTCTATACCAAGTTTTTCTCGGCTAACCTTAGAGACGCCAAAAGCCAGGAATTCTTGGAGTTGAAGCAAGGATATATGACAGTCGAGGAGTACGACCAGGAGTTTGATATGCTGTCACGTTTTGCCCCTGAGCTTGTTAGTAATGAGCAGGCTAGAGCTGATAGGTTCGTCAAGGGATTGAGAGATGAAATTAGGGGTTTTGTGCGAGCACTAAAGCCCACTACCCAAGCTGAAGCACTGCGTCTGGCAGTGGATATGAGTATTGGGAAGGATGAAAGACAGCCAAGGAGCTTTAATAAGGGATCGTCGTCGGGTCAAAAGAGAAAAGTAGAGCAGAGAACTGTAGGAGTTCCTCAGAGGAACATGAGACCAGGTGATTCTTTTCGCAGTTTCCAGCAGAGTTCTGGCGGTGCAGGAGACACTACTCAAGAGAGGCCAGTATGTGATACGTGTGGGAAACGCCACCTGGGTCGTTGTTTGATGGGAACGAGAGTCTGTTATAAGTGCAAGCAAGAGGGACACATGGCTGATAGGTGTCCCTTGAGATCTACTGGGGCTGGATCGAGCAGTCAGGGAGAGAGACCTCCACAGCGGGGTACAATCTTTGCCACTAATAGATCAGAGGCAGAGAAGGCCGGCACAGTAGTGACAGGTACGTTACCAGTATTGGGCATTTTGCCTTGA

mRNA sequence

ATGCCGCCAAGGGAAGAAGTACGTAGAGGAGGTCGTAGAGGCCGAGGTAGAGGAGCAGGAGGCCGAGGTAGAGGAGTAGGTCGTAATCAGCCTACTGAGGGTCAAGCTGAACATCGAATTCCTGCTGCACCCGTGACTCACGTCGAGTTTGATGCACTGTCTGCTCACATGGAGCAGAGGTTTACAGAACTTATGACAGCCATAGCTCAAAACCAGCAGGCACCTGCAGTCCCACCTGCACCTGTAGTTCCCCCTGCACCAGCAGCCCCTCCTGCACAAGAATTACCTAACCAACTTTCTGCTGAGGCGAAACATTTGAGGGACTTTCGGAAGTATGACCCTCAGACGTTTGATGGGTCACTGGAGGATCCTACTAAAGCTGAAATGTGGTTGTCCTCTGTGGAAACCATATTTAATTACATGAGATGTCCTGAGGAGCACAGAGTTCAGTGTGCTGCTTTTCTACTGAGGGACAGAGGCATTATCTGGTGGAGGACTACCATGCGCATGCTAGGTGGAGATGTGAGGCAGATTACCTGGGATCAGTTTAAGGACTGCTTCTATACCAAGTTTTTCTCGGCTAACCTTAGAGACGCCAAAAGCCAGGAATTCTTGGAGTTGAAGCAAGGATATATGACAGTCGAGGAGTACGACCAGGAGTTTGATATGCTGTCACGTTTTGCCCCTGAGCTTGTTAGTAATGAGCAGGCTAGAGCTGATAGGTTCGTCAAGGGATTGAGAGATGAAATTAGGGGTTTTGTGCGAGCACTAAAGCCCACTACCCAAGCTGAAGCACTGCGTCTGGCAGTGGATATGAGTATTGGGAAGGATGAAAGACAGCCAAGGAGCTTTAATAAGGGATCGTCGTCGGGTCAAAAGAGAAAAGTAGAGCAGAGAACTGTAGGAGTTCCTCAGAGGAACATGAGACCAGGTGATTCTTTTCGCAGTTTCCAGCAGAGTTCTGGCGGTGCAGGAGACACTACTCAAGAGAGGCCAGTATGTGATACGTGTGGGAAACGCCACCTGGGTCGTTGTTTGATGGGAACGAGAGTCTGTTATAAGTGCAAGCAAGAGGGACACATGGCTGATAGGTGTCCCTTGAGATCTACTGGGGCTGGATCGAGCAGTCAGGGAGAGAGACCTCCACAGCGGGGTACAATCTTTGCCACTAATAGATCAGAGGCAGAGAAGGCCGGCACAGTAGTGACAGGTACGTTACCAGTATTGGGCATTTTGCCTTGA

Coding sequence (CDS)

ATGCCGCCAAGGGAAGAAGTACGTAGAGGAGGTCGTAGAGGCCGAGGTAGAGGAGCAGGAGGCCGAGGTAGAGGAGTAGGTCGTAATCAGCCTACTGAGGGTCAAGCTGAACATCGAATTCCTGCTGCACCCGTGACTCACGTCGAGTTTGATGCACTGTCTGCTCACATGGAGCAGAGGTTTACAGAACTTATGACAGCCATAGCTCAAAACCAGCAGGCACCTGCAGTCCCACCTGCACCTGTAGTTCCCCCTGCACCAGCAGCCCCTCCTGCACAAGAATTACCTAACCAACTTTCTGCTGAGGCGAAACATTTGAGGGACTTTCGGAAGTATGACCCTCAGACGTTTGATGGGTCACTGGAGGATCCTACTAAAGCTGAAATGTGGTTGTCCTCTGTGGAAACCATATTTAATTACATGAGATGTCCTGAGGAGCACAGAGTTCAGTGTGCTGCTTTTCTACTGAGGGACAGAGGCATTATCTGGTGGAGGACTACCATGCGCATGCTAGGTGGAGATGTGAGGCAGATTACCTGGGATCAGTTTAAGGACTGCTTCTATACCAAGTTTTTCTCGGCTAACCTTAGAGACGCCAAAAGCCAGGAATTCTTGGAGTTGAAGCAAGGATATATGACAGTCGAGGAGTACGACCAGGAGTTTGATATGCTGTCACGTTTTGCCCCTGAGCTTGTTAGTAATGAGCAGGCTAGAGCTGATAGGTTCGTCAAGGGATTGAGAGATGAAATTAGGGGTTTTGTGCGAGCACTAAAGCCCACTACCCAAGCTGAAGCACTGCGTCTGGCAGTGGATATGAGTATTGGGAAGGATGAAAGACAGCCAAGGAGCTTTAATAAGGGATCGTCGTCGGGTCAAAAGAGAAAAGTAGAGCAGAGAACTGTAGGAGTTCCTCAGAGGAACATGAGACCAGGTGATTCTTTTCGCAGTTTCCAGCAGAGTTCTGGCGGTGCAGGAGACACTACTCAAGAGAGGCCAGTATGTGATACGTGTGGGAAACGCCACCTGGGTCGTTGTTTGATGGGAACGAGAGTCTGTTATAAGTGCAAGCAAGAGGGACACATGGCTGATAGGTGTCCCTTGAGATCTACTGGGGCTGGATCGAGCAGTCAGGGAGAGAGACCTCCACAGCGGGGTACAATCTTTGCCACTAATAGATCAGAGGCAGAGAAGGCCGGCACAGTAGTGACAGGTACGTTACCAGTATTGGGCATTTTGCCTTGA

Protein sequence

MPPREEVRRGGRRGRGRGAGGRGRGVGRNQPTEGQAEHRIPAAPVTHVEFDALSAHMEQRFTELMTAIAQNQQAPAVPPAPVVPPAPAAPPAQELPNQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLLRDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGKDERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVCDTCGKRHLGRCLMGTRVCYKCKQEGHMADRCPLRSTGAGSSSQGERPPQRGTIFATNRSEAEKAGTVVTGTLPVLGILP
Homology
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BLAST of CsaV3_3G021370 vs. NCBI nr
Match: ADN33767.1 (gag protease polyprotein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 450.7 bits (1158), Expect = 5.5e-123
Identity = 240/376 (63.83%), Postives = 285/376 (75.80%), Query Frame = 0 

Query: 41  PAAPVTHVEFDALSAHMEQRFTELM------TAIAQNQQAPAVPXXXXXXXXXXXXXXXX 100
           PAAPVTH +     A MEQRF +++                   XXXXXXXXXXXXX   
Sbjct: 265 PAAPVTHADL----AAMEQRFRDMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQF 324

Query: 101 XXNQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAF 160
             +QLSAEAKHLRDFRKY+P TFDGSLEDPT+A+MWLSS+ETIF YM+CPE+ +VQCA F
Sbjct: 325 VPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVF 384

Query: 161 LLRDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTV 220
           +L DRG  WW TT RMLGGDV QITW QFK+ FY KFFSA+LRDAK QEFL L+QG MTV
Sbjct: 385 MLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTV 444

Query: 221 EEYDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSI 280
           E+YD EFDMLSRFAPE+++ E ARAD+FV+GLR +I+G VRA +P T A+ALRLAVD+S+
Sbjct: 445 EQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSL 504

Query: 281 GKDERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVC 340
            +     ++  +GS+SGQKRK EQ+ V VPQRN RPG  FRSFQQ    AG+  + +P+C
Sbjct: 505 QERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLC 564

Query: 341 DTCGKRHLGRCLMGTRVCYKCKQEGHMADRCPLRSTGAGSSSQGERPPQRGTIFATNRSE 400
            TCGK HLGRCL GTR C+KC+QEGH ADRCPLR TG  + +QG   P +G +FATNR+E
Sbjct: 565 TTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRPTGI-AQNQGAGAPLQGRVFATNRTE 624

Query: 401 AEKAGTVVTGTLPVLG 411
           AEKAGTVVTGTLPVLG
Sbjct: 625 AEKAGTVVTGTLPVLG 635

[Close]
BLAST of CsaV3_3G021370 vs. NCBI nr
Match: AAO45751.1 (gag-protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 446.4 bits (1147), Expect = 1.0e-121
Identity = 214/314 (68.15%), Postives = 254/314 (80.89%), Query Frame = 0 

Query: 97  NQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLL 156
           +QLSAEAKHLRDFRKY+P TFDGSLEDPT+A+MWLSS+ETIF YM+CPE+ +VQCA F+L
Sbjct: 51  DQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFML 110

Query: 157 RDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEE 216
            DRG  WW TT RMLGGDV QITW QFK+ FY KFFSA+LRDAK QEFL L+QG MTVE+
Sbjct: 111 TDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQ 170

Query: 217 YDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGK 276
           YD EFDMLSRFAPE+++ E ARAD+FV+GLR +I+G VRA +P T A+ALRLAVD+S+ +
Sbjct: 171 YDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQE 230

Query: 277 DERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVCDT 336
                ++  +GS+SGQKRK EQ+ V VPQRN RPG  FRSFQQ    AG+  + +P+C T
Sbjct: 231 RANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTT 290

Query: 337 CGKRHLGRCLMGTRVCYKCKQEGHMADRCPLRSTGAGSSSQGERPPQRGTIFATNRSEAE 396
           CGK HLGRCL GTR C+KC+QEGH ADRCPLR TG  + +QG   P +G  FATNR+EAE
Sbjct: 291 CGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRVTGI-AQNQGAGAPHQGRAFATNRTEAE 350

Query: 397 KAGTVVTGTLPVLG 411
           KAGTVVTGTLPVLG
Sbjct: 351 KAGTVVTGTLPVLG 363

[Close]
BLAST of CsaV3_3G021370 vs. NCBI nr
Match: XP_011654360.1 (PREDICTED: uncharacterized protein LOC105435363 [Cucumis sativus])

HSP 1 Score: 383.3 bits (983), Expect = 1.1e-102
Identity = 202/225 (89.78%), Postives = 206/225 (91.56%), Query Frame = 0 

Query: 57  MEQRFTELMTAIAQNQQAPAVP--------XXXXXXXXXXXXXXXXXXNQLSAEAKHLRD 116
           MEQRFTELMTAIAQNQQAPAVP        XXXXXXXXX         NQLSAEAKHLR+
Sbjct: 1   MEQRFTELMTAIAQNQQAPAVPXXXXXXXXXXXXXXXXXAAQQPQILPNQLSAEAKHLRN 60

Query: 117 FRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLLRDRGIIWWRTTM 176
            RKYDPQTFDGSLEDPTKAE+WLSS+ETIFNYMRCPEEHRVQC AFLLRDRGIIWWRTTM
Sbjct: 61  LRKYDPQTFDGSLEDPTKAELWLSSMETIFNYMRCPEEHRVQCVAFLLRDRGIIWWRTTM 120

Query: 177 RMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFA 236
           RMLGGDVRQITWDQFK+CFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFA
Sbjct: 121 RMLGGDVRQITWDQFKNCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFA 180

Query: 237 PELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMS 274
           PELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMS
Sbjct: 181 PELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMS 225

[Close]
BLAST of CsaV3_3G021370 vs. NCBI nr
Match: XP_004153845.2 (PREDICTED: uncharacterized protein LOC101217708 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 3.6e-98
Identity = 180/202 (89.11%), Postives = 192/202 (95.05%), Query Frame = 0 

Query: 97  NQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLL 156
           NQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAE+WLSSVETIFNYMRCPEEHRVQCAAFLL
Sbjct: 19  NQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAELWLSSVETIFNYMRCPEEHRVQCAAFLL 78

Query: 157 RDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEE 216
           RDRGIIWWRT M MLGGDVRQITWDQFKDCFYTKFFSANLR+AKS EFLELKQG+MTVEE
Sbjct: 79  RDRGIIWWRTIMLMLGGDVRQITWDQFKDCFYTKFFSANLRNAKSHEFLELKQGHMTVEE 138

Query: 217 YDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGK 276
           YDQEF+MLS FAP+LV NEQARA+RFVKGLRDEIRGFVRALKPTTQAEAL LAVDMSIGK
Sbjct: 139 YDQEFNMLSLFAPKLVGNEQARAERFVKGLRDEIRGFVRALKPTTQAEALCLAVDMSIGK 198

Query: 277 DERQPRSFNKGSSSGQKRKVEQ 299
           D+ + +SF+K +SSGQK+K EQ
Sbjct: 199 DKVRVKSFDKETSSGQKKKAEQ 220

[Close]
BLAST of CsaV3_3G021370 vs. NCBI nr
Match: XP_011655042.1 (PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus] >XP_011655043.1 PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus] >XP_011655044.1 PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus] >XP_011655045.1 PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus] >XP_011655046.1 PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 164/310 (52.90%), Postives = 201/310 (64.84%), Query Frame = 0 

Query: 1   MPPREEVRRGGRRGXXXXXXXXXXXXXXXQPTEGQAEHRIPAAPVTHVEFDALSAHMEQR 60
           M  R+   RGG+ G               QP E       P APV+  +  A+S  +EQ 
Sbjct: 1   MTARKVASRGGQGG-----REAGHNQVDEQPAEQVTN---PVAPVSQADLTAMSTRLEQM 60

Query: 61  FTELMT-AIAQNQQAPAVPXXXXXXXXXXXXXXXXXXNQLSAEAKHLRDFRKYDPQTFDG 120
           F + +T  +AQ+Q A A P                  NQLSAEAKHLRDFR YDPQTF+G
Sbjct: 61  FKDTVTKVLAQHQLAQAAP-------SQGQAAPQDLPNQLSAEAKHLRDFRIYDPQTFNG 120

Query: 121 SLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLLRDRGIIWWRTTMRMLGGDVRQIT 180
             EDP    +WLSSVE IF+YM+CP+  +VQCA FLLR+R  IWW +  RMLGG+V Q T
Sbjct: 121 LSEDPINVMLWLSSVERIFHYMKCPDNQKVQCAVFLLRERAAIWWLSVERMLGGNVNQFT 180

Query: 181 WDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFAPELVSNEQARA 240
           WDQFK+ FY KFF A+LRD K QEF++LKQG MT+EEYD EFD+LS FAPELV  E ARA
Sbjct: 181 WDQFKESFYAKFFPASLRDDKRQEFIDLKQGQMTLEEYDYEFDILSLFAPELVETEAARA 240

Query: 241 DRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGKDERQPRSFNKGSSSGQKRKVEQR 300
            RFV GL++++RGFVRALKP TQ EALR+A+D+S  KD+  P+    G SSGQKRK EQ+
Sbjct: 241 QRFVWGLKNDLRGFVRALKPATQTEALRIAMDLSAHKDDDPPKVSRNGPSSGQKRKAEQK 295

Query: 301 TVGVPQRNMR 310
            + V  RN+R
Sbjct: 301 PIDVSWRNLR 295

[Close]
BLAST of CsaV3_3G021370 vs. TrEMBL
Match: tr|E5GBB7|E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 3.6e-123
Identity = 240/376 (63.83%), Postives = 285/376 (75.80%), Query Frame = 0 

Query: 41  PAAPVTHVEFDALSAHMEQRFTELM------TAIAQNQQAPAVPXXXXXXXXXXXXXXXX 100
           PAAPVTH +     A MEQRF +++                   XXXXXXXXXXXXX   
Sbjct: 265 PAAPVTHADL----AAMEQRFRDMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQF 324

Query: 101 XXNQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAF 160
             +QLSAEAKHLRDFRKY+P TFDGSLEDPT+A+MWLSS+ETIF YM+CPE+ +VQCA F
Sbjct: 325 VPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVF 384

Query: 161 LLRDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTV 220
           +L DRG  WW TT RMLGGDV QITW QFK+ FY KFFSA+LRDAK QEFL L+QG MTV
Sbjct: 385 MLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTV 444

Query: 221 EEYDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSI 280
           E+YD EFDMLSRFAPE+++ E ARAD+FV+GLR +I+G VRA +P T A+ALRLAVD+S+
Sbjct: 445 EQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSL 504

Query: 281 GKDERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVC 340
            +     ++  +GS+SGQKRK EQ+ V VPQRN RPG  FRSFQQ    AG+  + +P+C
Sbjct: 505 QERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLC 564

Query: 341 DTCGKRHLGRCLMGTRVCYKCKQEGHMADRCPLRSTGAGSSSQGERPPQRGTIFATNRSE 400
            TCGK HLGRCL GTR C+KC+QEGH ADRCPLR TG  + +QG   P +G +FATNR+E
Sbjct: 565 TTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRPTGI-AQNQGAGAPLQGRVFATNRTE 624

Query: 401 AEKAGTVVTGTLPVLG 411
           AEKAGTVVTGTLPVLG
Sbjct: 625 AEKAGTVVTGTLPVLG 635

[Close]
BLAST of CsaV3_3G021370 vs. TrEMBL
Match: tr|Q84KB1|Q84KB1_CUCME (Gag-protease polyprotein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.8e-122
Identity = 214/314 (68.15%), Postives = 254/314 (80.89%), Query Frame = 0 

Query: 97  NQLSAEAKHLRDFRKYDPQTFDGSLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLL 156
           +QLSAEAKHLRDFRKY+P TFDGSLEDPT+A+MWLSS+ETIF YM+CPE+ +VQCA F+L
Sbjct: 51  DQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFML 110

Query: 157 RDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEE 216
            DRG  WW TT RMLGGDV QITW QFK+ FY KFFSA+LRDAK QEFL L+QG MTVE+
Sbjct: 111 TDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQ 170

Query: 217 YDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGK 276
           YD EFDMLSRFAPE+++ E ARAD+FV+GLR +I+G VRA +P T A+ALRLAVD+S+ +
Sbjct: 171 YDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQE 230

Query: 277 DERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVCDT 336
                ++  +GS+SGQKRK EQ+ V VPQRN RPG  FRSFQQ    AG+  + +P+C T
Sbjct: 231 RANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTT 290

Query: 337 CGKRHLGRCLMGTRVCYKCKQEGHMADRCPLRSTGAGSSSQGERPPQRGTIFATNRSEAE 396
           CGK HLGRCL GTR C+KC+QEGH ADRCPLR TG  + +QG   P +G  FATNR+EAE
Sbjct: 291 CGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRVTGI-AQNQGAGAPHQGRAFATNRTEAE 350

Query: 397 KAGTVVTGTLPVLG 411
           KAGTVVTGTLPVLG
Sbjct: 351 KAGTVVTGTLPVLG 363

[Close]
BLAST of CsaV3_3G021370 vs. TrEMBL
Match: tr|A0A1S3C5M7|A0A1S3C5M7_CUCME (uncharacterized protein LOC103496742 OS=Cucumis melo OX=3656 GN=LOC103496742 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.2e-73
Identity = 156/299 (52.17%), Postives = 192/299 (64.21%), Query Frame = 0 

Query: 1   MPPREEVRRGGRRGXXXXXXXXXXXXXXXQPTEGQAEHRIPAAPVTHVEFDALSAHMEQR 60
           M PR   RRG + G               QP E  A    P AP+TH +       +EQR
Sbjct: 1   MTPRRSARRGDQGG---------RGVGCNQPAEQVAN---PVAPITHADL----TQLEQR 60

Query: 61  FTELMT-AIAQNQQAPAVPXXXXXXXXXXXXXXXXXXNQLSAEAKHLRDFRKYDPQTFDG 120
           F + +T  +A++Q A A                    +QLS EAKHLRDFR YDPQTF+G
Sbjct: 61  FNDTVTEVLARHQLAQAA-------LAQGQTAQQDLPDQLSVEAKHLRDFRIYDPQTFNG 120

Query: 121 SLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLLRDRGIIWWRTTMRMLGGDVRQIT 180
           SLEDP   ++WLSSVETIF +MRCP++ +VQCA FLLR+R  IWW++  RMLGG+V QIT
Sbjct: 121 SLEDPISTKLWLSSVETIFRFMRCPDDQKVQCAVFLLRERAAIWWQSVERMLGGNVNQIT 180

Query: 181 WDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFAPELVSNEQARA 240
           WDQFK+ FY KF  ++LRDAK QEF+ LKQG MTVEEYD EFDMLS FAPELV  E ARA
Sbjct: 181 WDQFKESFYAKFLPSSLRDAKRQEFINLKQGQMTVEEYDYEFDMLSLFAPELVETEAARA 240

Query: 241 DRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGKDERQPRSFNKGSSSGQKRKVEQ 299
             FV GLR +++GFVRA KP TQ EAL LA+D+S+ KD+   +   KG   GQKR++ +
Sbjct: 241 KMFVWGLRKDLQGFVRAFKPATQTEALYLALDLSVQKDDDLLKVSRKGPFLGQKRRLSR 276

[Close]
BLAST of CsaV3_3G021370 vs. TrEMBL
Match: tr|E5GB72|E5GB72_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.2e-73
Identity = 156/299 (52.17%), Postives = 192/299 (64.21%), Query Frame = 0 

Query: 1   MPPREEVRRGGRRGXXXXXXXXXXXXXXXQPTEGQAEHRIPAAPVTHVEFDALSAHMEQR 60
           M PR   RRG + G               QP E  A    P AP+TH +       +EQR
Sbjct: 1   MTPRRSARRGDQGG---------RGVGCNQPAEQVAN---PVAPITHADL----TQLEQR 60

Query: 61  FTELMT-AIAQNQQAPAVPXXXXXXXXXXXXXXXXXXNQLSAEAKHLRDFRKYDPQTFDG 120
           F + +T  +A++Q A A                    +QLS EAKHLRDFR YDPQTF+G
Sbjct: 61  FNDTVTEVLARHQLAQAA-------LAQGQTAQQDLPDQLSVEAKHLRDFRIYDPQTFNG 120

Query: 121 SLEDPTKAEMWLSSVETIFNYMRCPEEHRVQCAAFLLRDRGIIWWRTTMRMLGGDVRQIT 180
           SLEDP   ++WLSSVETIF +MRCP++ +VQCA FLLR+R  IWW++  RMLGG+V QIT
Sbjct: 121 SLEDPISTKLWLSSVETIFRFMRCPDDQKVQCAVFLLRERAAIWWQSVERMLGGNVNQIT 180

Query: 181 WDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEEYDQEFDMLSRFAPELVSNEQARA 240
           WDQFK+ FY KF  ++LRDAK QEF+ LKQG MTVEEYD EFDMLS FAPELV  E ARA
Sbjct: 181 WDQFKESFYAKFLPSSLRDAKRQEFINLKQGQMTVEEYDYEFDMLSLFAPELVETEAARA 240

Query: 241 DRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGKDERQPRSFNKGSSSGQKRKVEQ 299
             FV GLR +++GFVRA KP TQ EAL LA+D+S+ KD+   +   KG   GQKR++ +
Sbjct: 241 KMFVWGLRKDLQGFVRAFKPATQTEALYLALDLSVQKDDDLLKVSRKGPFLGQKRRLSR 276

[Close]
BLAST of CsaV3_3G021370 vs. TrEMBL
Match: tr|A0A1S3B610|A0A1S3B610_CUCME (uncharacterized protein LOC103486213 OS=Cucumis melo OX=3656 GN=LOC103486213 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 108/210 (51.43%), Postives = 149/210 (70.95%), Query Frame = 0 

Query: 157 RDRGIIWWRTTMRMLGGDVRQITWDQFKDCFYTKFFSANLRDAKSQEFLELKQGYMTVEE 216
           RDRG  WW+T  RMLGGDV +IT +QFK+ FY KFFSAN++ AK Q+FL L++G MTVE+
Sbjct: 10  RDRGTAWWQTVERMLGGDVSKITCEQFKESFYAKFFSANVKYAKQQKFLNLERGDMTVEQ 69

Query: 217 YDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVDMSIGK 276
           YD EFDMLSRF P +  +E+A+  +FVKGLR +++G VRA +PTT A+ALRLA+D+++ +
Sbjct: 70  YDAEFDMLSRFTPNVTKDEEAKTKKFVKGLRLDLQGIVRAFRPTTHADALRLALDLNLHE 129

Query: 277 DERQPRSFNKGSSSGQKRKVEQRTVGVPQRNMRPGDSFRSFQQSSGGAGDTTQERPVCDT 336
                ++  +GS+ GQKRKVE +     Q+N+R    F+  +     AG T +E PVC +
Sbjct: 130 RAGLSKAAGRGSALGQKRKVESQPDLTQQQNLRLRGVFQRHRWELAAAGRTFRELPVCPS 189

Query: 337 CGKRHLGRCLMGTRVCYKCKQEGHMADRCP 367
           CG+ H   CL+G+ VC+KC+Q GH AD CP
Sbjct: 190 CGRVHGDCCLVGSGVCFKCRQPGHTADACP 219

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021370 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33767.15.5e-12363.83gag protease polyprotein, partial [Cucumis melo subsp. melo][more]
AAO45751.11.0e-12168.15gag-protease polyprotein [Cucumis melo subsp. melo][more]
XP_011654360.11.1e-10289.78PREDICTED: uncharacterized protein LOC105435363 [Cucumis sativus][more]
XP_004153845.23.6e-9889.11PREDICTED: uncharacterized protein LOC101217708 [Cucumis sativus][more]
XP_011655042.12.8e-7952.90PREDICTED: uncharacterized protein LOC101209878 [Cucumis sativus] >XP_011655043.... [more]
BLAST of CsaV3_3G021370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB7|E5GBB7_CUCME3.6e-12363.83Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 S... [more]
tr|Q84KB1|Q84KB1_CUCME6.8e-12268.15Gag-protease polyprotein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C5M7|A0A1S3C5M7_CUCME1.2e-7352.17uncharacterized protein LOC103496742 OS=Cucumis melo OX=3656 GN=LOC103496742 PE=... [more]
tr|E5GB72|E5GB72_CUCME1.2e-7352.17Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
tr|A0A1S3B610|A0A1S3B610_CUCME2.7e-5451.43uncharacterized protein LOC103486213 OS=Cucumis melo OX=3656 GN=LOC103486213 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR005162Retrotrans_gag_dom
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021370.1CsaV3_3G021370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 351..367
e-value: 8.7E-4
score: 28.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 350..366
e-value: 7.8E-6
score: 25.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 352..366
score: 9.9
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 348..394
e-value: 2.3E-6
score: 29.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 369..385
NoneNo IPR availablePANTHERPTHR34482FAMILY NOT NAMEDcoord: 109..276
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 152..248
e-value: 4.3E-15
score: 55.7
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 346..371

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021370Silver-seed gourdcarcucB0801
CsaV3_3G021370Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021370Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G021370Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G021370Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G021370Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G021370Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G021370Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G021370Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021370Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G021370Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G021370Melon (DHL92) v3.6.1cucmedB247
CsaV3_3G021370Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G021370Watermelon (97103) v1cucwmB254
CsaV3_3G021370Watermelon (97103) v2cucwmbB220
CsaV3_3G021370Wax gourdcucwgoB274