CsaV3_3G021230 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G021230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 17994495 .. 17994722 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGTCGATCCAAGAAGAGAATGGTGACGAACAGATAACGGGAAATTTACCCAAAGATGAAGATGTCGATCCAAGAAGAGAATGGCGACGAACAGAGAACGGAGAACGAACCCACGTGAACTCGTGTAGGAGGAAGACGAATGAAGGACTGGCGAAGGACGAAGACGAAGGACGAAGAAGTGCGAACTGCAGGAGGGAATACGTTAAAGATATACTTTCTTAA

mRNA sequence

ATGAAGATGTCGATCCAAGAAGAGAATGGTGACGAACAGATAACGGGAAATTTACCCAAAGATGAAGATGTCGATCCAAGAAGAGAATGGCGACGAACAGAGAACGGAGAACGAACCCACGTGAACTCGTGTAGGAGGAAGACGAATGAAGGACTGGCGAAGGACGAAGACGAAGGACGAAGAAGTGCGAACTGCAGGAGGGAATACGTTAAAGATATACTTTCTTAA

Coding sequence (CDS)

ATGAAGATGTCGATCCAAGAAGAGAATGGTGACGAACAGATAACGGGAAATTTACCCAAAGATGAAGATGTCGATCCAAGAAGAGAATGGCGACGAACAGAGAACGGAGAACGAACCCACGTGAACTCGTGTAGGAGGAAGACGAATGAAGGACTGGCGAAGGACGAAGACGAAGGACGAAGAAGTGCGAACTGCAGGAGGGAATACGTTAAAGATATACTTTCTTAA

Protein sequence

MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGRRSANCRREYVKDILS
BLAST of CsaV3_3G021230 vs. NCBI nr
Match: KGN57818.1 (hypothetical protein Csa_3G319300 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR 60
          MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR
Sbjct: 1  MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR 60

Query: 61 RSANCRREYVKDILS 76
          RSANCRREYVKDILS
Sbjct: 61 RSANCRREYVKDILS 75

BLAST of CsaV3_3G021230 vs. TrEMBL
Match: tr|A0A0A0L7N2|A0A0A0L7N2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G319300 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.9e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR 60
          MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR
Sbjct: 1  MKMSIQEENGDEQITGNLPKDEDVDPRREWRRTENGERTHVNSCRRKTNEGLAKDEDEGR 60

Query: 61 RSANCRREYVKDILS 76
          RSANCRREYVKDILS
Sbjct: 61 RSANCRREYVKDILS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57818.14.3e-34100.00hypothetical protein Csa_3G319300 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L7N2|A0A0A0L7N2_CUCSA2.9e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G319300 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021230.1CsaV3_3G021230.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G021230CSPI03G21560Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None