CsaV3_3G021170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 17844924 .. 17845203 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATGAAGAGACCGAAATTGAAAGCATTGCTGAATTAGAACCGGTTGCCTCTCTGCAAAATCTGTTCCCATTAAGTAAGGAAGTGGTTGTGGTGCTTCTTGAGTATGACTTATGCATCCAGGCAGTGACTAGAAAAGGAAAATCGTAGAGAAAAGGGTGGGGCTTCCACGAGCAGTAATAAGAAGCTCACTAGAGAAGGTAAAGTTTTACTTGGTAGTTAGGAAAGGGAAGCTCAAGCAGCCAAAGCCAGTACTTCTCAGGGTCCTGATGAGTGA

mRNA sequence

ATGCCTAATGAAGAGACCGAAATTGAAAGCATTGCTGAATTAGAACCGGTTGCCTCTCTGCAAAATCTGTTCCCATTAAGTAAGGAAGTGGTTGTGGTGCTTCTTGAGTATGACTTATGCATCCAGGCAGAAAGGGAAGCTCAAGCAGCCAAAGCCAGTACTTCTCAGGGTCCTGATGAGTGA

Coding sequence (CDS)

ATGCCTAATGAAGAGACCGAAATTGAAAGCATTGCTGAATTAGAACCGGTTGCCTCTCTGCAAAATCTGTTCCCATTAAGTAAGGAAGTGGTTGTGGTGCTTCTTGAGTATGACTTATGCATCCAGGCAGAAAGGGAAGCTCAAGCAGCCAAAGCCAGTACTTCTCAGGGTCCTGATGAGTGA

Protein sequence

MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE
Homology
[Close]
BLAST of CsaV3_3G021170 vs. NCBI nr
Match: KGN57811.1 (hypothetical protein Csa_3G314750 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE 60
          MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE
Sbjct: 1  MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE 60

[Close]
BLAST of CsaV3_3G021170 vs. NCBI nr
Match: KGN58525.1 (hypothetical protein Csa_3G656530 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1   MPNEET-EIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQA 44
           + NEE  EIES+ ELEP AS+QN FPLSKEVV  LLEYDLCI+A
Sbjct: 61  LSNEELYEIESVTELEPAASIQNPFPLSKEVVAALLEYDLCIRA 104

[Close]
BLAST of CsaV3_3G021170 vs. NCBI nr
Match: KGN47248.1 (hypothetical protein Csa_6G235560 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 4   EETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQA 44
           E T+IES+ ELEP AS+QN F LSKEVV  LLEYDLCI A
Sbjct: 76  ETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWA 115

[Close]
BLAST of CsaV3_3G021170 vs. TrEMBL
Match: tr|A0A0A0LCL7|A0A0A0LCL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G314750 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE 60
          MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE
Sbjct: 1  MPNEETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQAEREAQAAKASTSQGPDE 60

[Close]
BLAST of CsaV3_3G021170 vs. TrEMBL
Match: tr|A0A0A0L9C9|A0A0A0L9C9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656530 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 1   MPNEET-EIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQA 44
           + NEE  EIES+ ELEP AS+QN FPLSKEVV  LLEYDLCI+A
Sbjct: 61  LSNEELYEIESVTELEPAASIQNPFPLSKEVVAALLEYDLCIRA 104

[Close]
BLAST of CsaV3_3G021170 vs. TrEMBL
Match: tr|A0A0A0KCH2|A0A0A0KCH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235560 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-05
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 4   EETEIESIAELEPVASLQNLFPLSKEVVVVLLEYDLCIQA 44
           E T+IES+ ELEP AS+QN F LSKEVV  LLEYDLCI A
Sbjct: 76  ETTKIESVIELEPAASMQNPFLLSKEVVATLLEYDLCIWA 115

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57811.11.4e-22100.00hypothetical protein Csa_3G314750 [Cucumis sativus][more]
KGN58525.12.4e-0672.73hypothetical protein Csa_3G656530 [Cucumis sativus][more]
KGN47248.17.6e-0572.50hypothetical protein Csa_6G235560 [Cucumis sativus][more]
BLAST of CsaV3_3G021170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCL7|A0A0A0LCL7_CUCSA9.1e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G314750 PE=4 SV=1[more]
tr|A0A0A0L9C9|A0A0A0L9C9_CUCSA1.6e-0672.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656530 PE=4 SV=1[more]
tr|A0A0A0KCH2|A0A0A0KCH2_CUCSA5.0e-0572.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235560 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021170.1CsaV3_3G021170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G021170MELO3C032043.2Melon (DHL92) v3.6.1cucmedB247
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021170Silver-seed gourdcarcucB0544
CsaV3_3G021170Silver-seed gourdcarcucB0801
CsaV3_3G021170Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021170Cucumber (Gy14) v1cgycucB569
CsaV3_3G021170Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G021170Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G021170Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G021170Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G021170Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G021170Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G021170Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021170Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G021170Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G021170Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G021170Watermelon (97103) v1cucwmB254
CsaV3_3G021170Watermelon (97103) v2cucwmbB220
CsaV3_3G021170Wax gourdcucwgoB274