CsaV3_3G020980 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G020980
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 17407629 .. 17407868 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGGTTCACCACTTTAGTGGAAACTTTGGATTTGTGTTTTACTTTTCTTCTTTGCTTTGCTTTGTTGTTTTGGTTTTTTGTTTACAGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

mRNA sequence

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

Coding sequence (CDS)

ATGGGTATTGAAGAAACACAGAGAATCAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGGTGAAACGGAGCTTAGAGACAAAGAGACAGACAGTGATTTGGAGAGAGCAGTCTTCTTCTCTTCTCTCTTTCTTCATGGCATCTCTCCATTTTAA

Protein sequence

MGIEETQRIRGRKEGRKEGNGETELRDKETDSDLERAVFFSSLFLHGISPF

Homology

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BLAST of CsaV3_3G020980 vs. NCBI nr
Match: KGN57788.1 (hypothetical protein Csa_3G302130 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-14
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF 52
          MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF
Sbjct: 1  MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF 51

[Close]

BLAST of CsaV3_3G020980 vs. TrEMBL
Match: tr|A0A0A0L7K4|A0A0A0L7K4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302130 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF 52
          MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF
Sbjct: 1  MGIEETQRIRGRKEXXXXXXXXTELRDKETDSDLERAVFFSSLFLHGISPF 51

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57788.1	7.6e-14	100.00	hypothetical protein Csa_3G302130 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7K4\|A0A0A0L7K4_CUCSA	5.0e-14	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302130 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020980.1	CsaV3_3G020980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G020980	Wax gourd	cucwgoB274
CsaV3_3G020980	Wax gourd	cucwgoB304
CsaV3_3G020980	Silver-seed gourd	carcucB0518
CsaV3_3G020980	Silver-seed gourd	carcucB0801
CsaV3_3G020980	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G020980	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G020980	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G020980	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G020980	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G020980	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G020980	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G020980	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G020980	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G020980	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G020980	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G020980	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G020980	Watermelon (97103) v1	cucwmB254
CsaV3_3G020980	Watermelon (97103) v2	cucwmbB220