CsaV3_3G020940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 17357803 .. 17358104 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCTCTCTCTCCCTCACAACTCTTATCCCAGTTTCAGCCACTGTCTCCCGGCATCTCACCTTTCTTACGTTTGCTGTTAACGATGAAATTGATACAAGGCGTCCTCATGGAATTTTAAAGGAGCTGAGTTTTGATCAATTCATAGAACACGTTCTTCACCTTCTTCTTCTTCTTCTTCTTAATTATTTTTCTTGGCTACTCTTTTTTCTTTTTCTTCTCTACAATCAGAAACTTCATCTTCTGATGTATGTGTTGTTCTTCCATTTCCCTTGCAAAATCGCCATACAATTACGTAG

mRNA sequence

ATGGCTAGCTCTCTCTCCCTCACAACTCTTATCCCAGTTTCAGCCACTGTCTCCCGGCATCTCACCTTTCTTACGTTTGCTGTTAACGATGAAATTGATACAAGGCGTCCTCATGGAATTTTAAAGGAGCTGAAAACTTCATCTTCTGATGTATGTGTTGTTCTTCCATTTCCCTTGCAAAATCGCCATACAATTACGTAG

Coding sequence (CDS)

ATGGCTAGCTCTCTCTCCCTCACAACTCTTATCCCAGTTTCAGCCACTGTCTCCCGGCATCTCACCTTTCTTACGTTTGCTGTTAACGATGAAATTGATACAAGGCGTCCTCATGGAATTTTAAAGGAGCTGAAAACTTCATCTTCTGATGTATGTGTTGTTCTTCCATTTCCCTTGCAAAATCGCCATACAATTACGTAG

Protein sequence

MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQNRHTIT
Homology
[Close]
BLAST of CsaV3_3G020940 vs. NCBI nr
Match: KGN57783.1 (hypothetical protein Csa_3G300590 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ 60
          MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ
Sbjct: 1  MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ 60

Query: 61 NRHTIT 67
          NRHTIT
Sbjct: 61 NRHTIT 66

[Close]
BLAST of CsaV3_3G020940 vs. TrEMBL
Match: tr|A0A0A0L7K0|A0A0A0L7K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G300590 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ 60
          MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ
Sbjct: 1  MASSLSLTTLIPVSATVSRHLTFLTFAVNDEIDTRRPHGILKELKTSSSDVCVVLPFPLQ 60

Query: 61 NRHTIT 67
          NRHTIT
Sbjct: 61 NRHTIT 66

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57783.12.7e-27100.00hypothetical protein Csa_3G300590 [Cucumis sativus][more]
BLAST of CsaV3_3G020940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7K0|A0A0A0L7K0_CUCSA1.8e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G300590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020940.1CsaV3_3G020940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G020940CsGy3G020570Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020940Wax gourdcucwgoB274
CsaV3_3G020940Wax gourdcucwgoB304
CsaV3_3G020940Wax gourdcucwgoB305
CsaV3_3G020940Silver-seed gourdcarcucB0517
CsaV3_3G020940Silver-seed gourdcarcucB0518
CsaV3_3G020940Silver-seed gourdcarcucB0801
CsaV3_3G020940Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020940Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020940Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020940Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020940Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020940Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020940Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020940Bottle gourd (USVL1VR-Ls)cuclsiB225
CsaV3_3G020940Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020940Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020940Melon (DHL92) v3.6.1cucmedB247
CsaV3_3G020940Watermelon (Charleston Gray)cucwcgB230
CsaV3_3G020940Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020940Watermelon (97103) v1cucwmB245
CsaV3_3G020940Watermelon (97103) v1cucwmB254
CsaV3_3G020940Watermelon (97103) v2cucwmbB212
CsaV3_3G020940Watermelon (97103) v2cucwmbB220