CsaV3_3G020930 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G020930
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 17315617 .. 17315964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

mRNA sequence

ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

Coding sequence (CDS)

ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

Protein sequence

MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF

Homology

[Close]

BLAST of CsaV3_3G020930 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_3G298590 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60
          MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM
Sbjct: 1  MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60

Query: 61 TAENLEIMLGLFLEENKRREKLRETYGGE 90
          TAENLEIMLGLFLEENKRREKLRETYGGE
Sbjct: 61 TAENLEIMLGLFLEENKRREKLRETYGGE 89

[Close]

BLAST of CsaV3_3G020930 vs. NCBI nr
Match: KGN58007.1 (hypothetical protein Csa_3G427420 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 21 DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEE 80
          DG +SEQAQ + +      TL  SS+IFG EGFN FNF GREI +T +++E+MLGLFLEE
Sbjct: 8  DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVMLGLFLEE 67

Query: 81 NKRREK 82
          N+RRE+
Sbjct: 68 NQRRER 73

[Close]

BLAST of CsaV3_3G020930 vs. TrEMBL
Match: tr|A0A0A0LAT2|A0A0A0LAT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.0e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60
          MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM
Sbjct: 1  MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60

Query: 61 TAENLEIMLGLFLEENKRREKLRETYGGE 90
          TAENLEIMLGLFLEENKRREKLRETYGGE
Sbjct: 61 TAENLEIMLGLFLEENKRREKLRETYGGE 89

[Close]

BLAST of CsaV3_3G020930 vs. TrEMBL
Match: tr|A0A0A0LBL2|A0A0A0LBL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 21 DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEE 80
          DG +SEQAQ + +      TL  SS+IFG EGFN FNF GREI +T +++E+MLGLFLEE
Sbjct: 8  DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVMLGLFLEE 67

Query: 81 NKRREK 82
          N+RRE+
Sbjct: 68 NQRRER 73

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57782.1	1.1e-39	100.00	hypothetical protein Csa_3G298590 [Cucumis sativus]	[more]
KGN58007.1	1.0e-10	59.09	hypothetical protein Csa_3G427420 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020930 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAT2\|A0A0A0LAT2_CUCSA	7.0e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1	[more]
tr\|A0A0A0LBL2\|A0A0A0LBL2_CUCSA	6.8e-11	59.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020930.1	CsaV3_3G020930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..115

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G020930	Silver-seed gourd	carcucB0517
CsaV3_3G020930	Silver-seed gourd	carcucB0518
CsaV3_3G020930	Silver-seed gourd	carcucB0801
CsaV3_3G020930	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G020930	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G020930	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G020930	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G020930	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G020930	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G020930	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G020930	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G020930	Bottle gourd (USVL1VR-Ls)	cuclsiB225
CsaV3_3G020930	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G020930	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G020930	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G020930	Watermelon (Charleston Gray)	cucwcgB230
CsaV3_3G020930	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G020930	Watermelon (97103) v1	cucwmB245
CsaV3_3G020930	Watermelon (97103) v1	cucwmB254
CsaV3_3G020930	Watermelon (97103) v2	cucwmbB212
CsaV3_3G020930	Watermelon (97103) v2	cucwmbB220
CsaV3_3G020930	Wax gourd	cucwgoB274
CsaV3_3G020930	Wax gourd	cucwgoB304
CsaV3_3G020930	Wax gourd	cucwgoB305