CsaV3_3G020690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020690
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 16894239 .. 16894529 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAAGTCGCGCCTTTCCTGATACTTGTTGACGTCATGCTGATGTCAACCTACTTCCAGACGTGTGCAAATTTTTTCTTTTCACTTTTTGTGCAGTTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

mRNA sequence

ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAATTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

Coding sequence (CDS)

ATGGAAGAACTGACCCAAAAAATGAAGACCGACCAAAAGAATGAACAATCGACGCAAAAAACAGTTGAACCGACCCACAAGGTTGAACCGCGTCGAACTGGAGCCACTCGTGCCAAATCAGATGAAGTCGCACTAAGTTGCGCCGCAAGATGCCAATTACGTAATTCCTCCCATTTTAGGCCTTCTTGTGGTCCATTTTGA

Protein sequence

MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFRPSCGPF
Homology
[Close]
BLAST of CsaV3_3G020690 vs. NCBI nr
Match: KGN57755.1 (hypothetical protein Csa_3G280940 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60
          MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR
Sbjct: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60

Query: 61 PSCGPF 67
          PSCGPF
Sbjct: 61 PSCGPF 66

[Close]
BLAST of CsaV3_3G020690 vs. TrEMBL
Match: tr|A0A0A0L6Z0|A0A0A0L6Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280940 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60
          MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR
Sbjct: 1  MEELTQKMKTDQKNEQSTQKTVEPTHKVEPRRTGATRAKSDEVALSCAARCQLRNSSHFR 60

Query: 61 PSCGPF 67
          PSCGPF
Sbjct: 61 PSCGPF 66

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57755.12.0e-27100.00hypothetical protein Csa_3G280940 [Cucumis sativus][more]
BLAST of CsaV3_3G020690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6Z0|A0A0A0L6Z0_CUCSA1.3e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280940 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020690.1CsaV3_3G020690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020690Silver-seed gourdcarcucB0518
CsaV3_3G020690Silver-seed gourdcarcucB0801
CsaV3_3G020690Cucumber (Gy14) v2cgybcucB117
CsaV3_3G020690Cucumber (Gy14) v1cgycucB006
CsaV3_3G020690Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020690Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020690Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020690Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020690Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020690Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020690Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020690Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020690Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020690Melon (DHL92) v3.6.1cucmedB235
CsaV3_3G020690Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020690Watermelon (97103) v1cucwmB254
CsaV3_3G020690Watermelon (97103) v2cucwmbB220
CsaV3_3G020690Wax gourdcucwgoB274