CsaV3_3G020430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 16534642 .. 16534908 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGTCCTTGGAAGAAGAAGCAAAGGTAGAGAGTGGGAGACAAATTAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

mRNA sequence

ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

Coding sequence (CDS)

ATGGAAAGCACTTCCTCGCCTGATGCTGATTTTATAGGGTTAGCAACAAGAACCCCCACAAGATCCACATTGGGAATTCAGGCGGGCGAAGACGTGGCCGAGGAGTTTGAGAAACAAGAGATTATAAACACTCTGTTGGAGGAGAAAGTGTCCACCCACAAGAAAGAAGAGATCCTAGCGCATTCAAGGATGCTCTTGCAGGCACAAGCAGAGGAAATGTGA

Protein sequence

MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILAHSRMLLQAQAEEM
Homology
[Close]
BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_3G265260 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60
          MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60

Query: 61 HSRMLLQAQAEEM 74
          HSRMLLQAQAEEM
Sbjct: 61 HSRMLLQAQAEEM 73

[Close]
BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 73
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 86

[Close]
BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_3G417670 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96

Query: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 73
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 97  EEKLSIHKKEEILACARMLLWTQLDK 122

[Close]
BLAST of CsaV3_3G020430 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117

Query: 62  EKVSTHKKEEILAHSRMLLQAQAEE 73
           E     KKEEIL HS MLL AQ E+
Sbjct: 118 E----FKKEEILEHSMMLLWAQVED 138

[Close]
BLAST of CsaV3_3G020430 vs. TrEMBL
Match: tr|A0A0A0L6W8|A0A0A0L6W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60
          MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA
Sbjct: 1  MESTSSPDADFIGLATRTPTRSTLGIQAGEDVAEEFEKQEIINTLLEEKVSTHKKEEILA 60

Query: 61 HSRMLLQAQAEEM 74
          HSRMLLQAQAEEM
Sbjct: 61 HSRMLLQAQAEEM 73

[Close]
BLAST of CsaV3_3G020430 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1  MESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLL 60
          ME TSSPDADF GLATRT  RST  I              + G+DVAEEFEK++  NTL 
Sbjct: 1  MEITSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLS 60

Query: 61 EEKVSTHKKEEILAHSRMLLQAQAEE 73
          EEKV   KKEE   +SR LLQAQ EE
Sbjct: 61 EEKVPNCKKEEGQVYSRTLLQAQVEE 86

[Close]
BLAST of CsaV3_3G020430 vs. TrEMBL
Match: tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96

Query: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 73
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 97  EEKLSIHKKEEILACARMLLWTQLDK 122

[Close]
BLAST of CsaV3_3G020430 vs. TrEMBL
Match: tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117

Query: 62  EKVSTHKKEEILAHSRMLLQAQAEE 73
           E     KKEEIL HS MLL AQ E+
Sbjct: 118 E----FKKEEILEHSMMLLWAQVED 138

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57730.11.8e-29100.00hypothetical protein Csa_3G265260 [Cucumis sativus][more]
KGN65003.11.9e-1056.98hypothetical protein Csa_1G173720 [Cucumis sativus][more]
KGN57975.13.6e-0953.49hypothetical protein Csa_3G417670 [Cucumis sativus][more]
KGN57939.11.0e-0855.29hypothetical protein Csa_3G399460 [Cucumis sativus][more]
BLAST of CsaV3_3G020430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6W8|A0A0A0L6W8_CUCSA1.2e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1[more]
tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA1.3e-1056.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1[more]
tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA2.4e-0953.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1[more]
tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA6.9e-0955.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020430.1CsaV3_3G020430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020430Silver-seed gourdcarcucB0518
CsaV3_3G020430Silver-seed gourdcarcucB0801
CsaV3_3G020430Cucumber (Gy14) v2cgybcucB117
CsaV3_3G020430Cucumber (Gy14) v1cgycucB006
CsaV3_3G020430Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020430Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020430Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020430Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020430Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020430Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020430Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020430Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020430Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020430Melon (DHL92) v3.6.1cucmedB235
CsaV3_3G020430Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020430Watermelon (97103) v1cucwmB256
CsaV3_3G020430Watermelon (97103) v2cucwmbB220
CsaV3_3G020430Wax gourdcucwgoB274