CsaV3_3G020370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G020370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 16447125 .. 16447427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

mRNA sequence

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Coding sequence (CDS)

ATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Protein sequence

MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP

Homology

[Close]

BLAST of CsaV3_3G020370 vs. NCBI nr
Match: KGN57724.1 (hypothetical protein Csa_3G263220 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 101
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsaV3_3G020370 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM 43
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM 184

[Close]

BLAST of CsaV3_3G020370 vs. TrEMBL
Match: tr|A0A0A0L9R5|A0A0A0L9R5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.2e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 101
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsaV3_3G020370 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM 43
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM 184

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57724.1	1.2e-52	100.00	hypothetical protein Csa_3G263220 [Cucumis sativus]	[more]
KGN53624.1	6.6e-06	59.52	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9R5\|A0A0A0L9R5_CUCSA	8.2e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1	[more]
tr\|A0A0A0KXQ2\|A0A0A0KXQ2_CUCSA	4.4e-06	59.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020370.1	CsaV3_3G020370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G020370	Wax gourd	cucwgoB274
CsaV3_3G020370	Silver-seed gourd	carcucB0518
CsaV3_3G020370	Silver-seed gourd	carcucB0801
CsaV3_3G020370	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G020370	Cucumber (Gy14) v1	cgycucB006
CsaV3_3G020370	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G020370	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G020370	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G020370	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G020370	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G020370	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G020370	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G020370	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G020370	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G020370	Melon (DHL92) v3.6.1	cucmedB235
CsaV3_3G020370	Melon (DHL92) v3.6.1	cucmedB237
CsaV3_3G020370	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G020370	Watermelon (97103) v1	cucwmB256
CsaV3_3G020370	Watermelon (97103) v2	cucwmbB220