CsaV3_3G020090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 15957763 .. 15958601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGGTATTCTTTCTTCTAATTCTTACTTTTTTTATCCTCTTATTTCAGCTATCAATCTCTCCTCCCTTTCTTTTACAACCGTTGAATGAATTATTGAAGATTCACCAAACTCTCTTGCGTTTTACCGATTTATTTTTTTGTGTAGTTCTAATTAGATCAATGCCCGTCTCTTTATGCGTGTTTGATGCTGATTTTTTTGTAATTAGTTTCCTGTCATTTGATTTTGAATTTTGTTCTCGTTGCCTTCCTGCTTAATCATTTTGGAATATTTTCAAGTTATGATGGTTGTACGCACATTTCAGGATTTCCCATATTATTCTTTTGTCTTCTCCAATCAACATAGCACTTCCATTGTTAATTAATGTTTTTCTCTCGATCTACCATGTTTGTTTCTCACTCTTTGAATAGATTGAGCTCTAACTTGACCTTTGTGGAATGGGTGTTATTCCTTTTTTTATGTGTCTGCAACATGAAAGTATCGATTTTTTTTACTTGGTTTTTTTAAGTAATGGCGAGTCATTGCTTAGTGGCAGCATGACGCCTGA

mRNA sequence

ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGTGGCAGCATGACGCCTGA

Coding sequence (CDS)

ATGACCCACACCCCATCTCCCTTGCCGGGTATTGACTGTTACTTCCCCACACGAAGAAACCCGCGAAAGCAACACCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCTTTCCATTGAAGCTTCCATCCTTTTCCCTTTTCTTCCCGTTTCCCAAATATCCTAATCCCCTCCCACCTCAAACAACTGCCGCTCAAGTCAAACCCCCACCTCTTTTTCAACTCCCACTTTTCCCTTTTTCCTTCATTTCATTCATCTTCCTCTTTTCACCCTCATCGCCCCCCTTCCAATTGCAATTCCAGTGGCAGCATGACGCCTGA

Protein sequence

MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLPLFPLKLPSFSLFFPFPKYPNPLPPQTTAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA
Homology
[Close]
BLAST of CsaV3_3G020090 vs. NCBI nr
Match: KGN57688.1 (hypothetical protein Csa_3G252470 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 9.9e-37
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPXXXXXXXXXXXXXXXXXXXXXXXXXPQT 60
           MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLP XXXXXXXXXXXXXXXXXXXXXXXXPQT
Sbjct: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLXXXXXXXXXXXXXXXXXXXXXXXXPQT 60

Query: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 105
           TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA
Sbjct: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 104

[Close]
BLAST of CsaV3_3G020090 vs. TrEMBL
Match: tr|A0A0A0L7C0|A0A0A0L7C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G252470 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.5e-37
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPXXXXXXXXXXXXXXXXXXXXXXXXXPQT 60
           MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLP XXXXXXXXXXXXXXXXXXXXXXXXPQT
Sbjct: 1   MTHTPSPLPGIDCYFPTRRNPRKQHPLSLPLPLXXXXXXXXXXXXXXXXXXXXXXXXPQT 60

Query: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 105
           TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA
Sbjct: 61  TAAQVKPPPLFQLPLFPFSFISFIFLFSPSSPPFQLQFQWQHDA 104

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57688.19.9e-3799.04hypothetical protein Csa_3G252470 [Cucumis sativus][more]
BLAST of CsaV3_3G020090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7C0|A0A0A0L7C0_CUCSA6.5e-3799.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G252470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020090.1CsaV3_3G020090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020090Wax gourdcucwgoB294
CsaV3_3G020090Silver-seed gourdcarcucB0518
CsaV3_3G020090Silver-seed gourdcarcucB0526
CsaV3_3G020090Cucumber (Gy14) v2cgybcucB117
CsaV3_3G020090Cucumber (Gy14) v1cgycucB006
CsaV3_3G020090Cucurbita maxima (Rimu)cmacucB0144
CsaV3_3G020090Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020090Cucurbita moschata (Rifu)cmocucB0132
CsaV3_3G020090Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020090Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020090Cucurbita pepo (Zucchini)cpecucB0842
CsaV3_3G020090Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020090Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020090Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020090Melon (DHL92) v3.6.1cucmedB237
CsaV3_3G020090Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020090Watermelon (97103) v1cucwmB256
CsaV3_3G020090Watermelon (97103) v2cucwmbB220