CsaV3_3G019370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 15250945 .. 15252054 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGCGTGAGAGGGAGAGCGTGTGAATTGTGTGGGAGAAAACCTAATCTAATTTCCTTTTATTATTATTATATATATATTATTAATTCGGGTTGGGTTGGGTTGAACCGAATTATTCACCCACAATCCAAGACCCAACCCAACCCGAAAAAATTCTATTTTTTTAACTCAACCCAATCCATATTTTAACATAACCCAGCCTAACCCTTATAATATGGATGGAGTAGTCTGGGTTAGGGTTCAACCCATATTTTTACACCCCTAGCTTCTCCATATGGACATCTTATTTGGTAGGTCTTTCTTTTCATAGAGTGCCTTCAATTTCTCCCAAGTAGCAAAGGCAGTAGTGGTTTCTTTAATTACCTGTCTCAACACATTATCAATAATATTCATAACAAGTGTACCATAAGCTACCTCTTCCATTGTTCTAACTTGGCCAAAGTTGCATGGAGTTCTTTTGGGTCTTGAACATAAATAAGATTTTAAATTAATAGTTTGATAACCAACATCAAACAATTAATTGCTTAAGTTTCCAACTTACCAAGAAGGATGGTACAACCCAATCAACCTCAAGTAGAGATTCACAAATTCCAATCTTAGAGGAAATTACTCAACCTTCTAGTAAAGAAAATAACCCAACTTAAACATATTGTAAATTTATTTAAAACTAATAATCATTAATTGATGGGTATATCTAGACCCAAACAAAACCTTACCAAAAGAACCTAAAACATGGCTGAAAAGGAGTCAAAGAAGGCTCACGACTTGGCTAAGAATAAGAATCGGCTCAGAACGGCTTGAGGAACTCACACGCGGCTGGAGTAGGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

mRNA sequence

ATGAATCGCGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

Coding sequence (CDS)

ATGAATCGCGAAGATCGGCTTGCTCTCGGCTCGGTGAGGAAGAAGGAAGACACGCGGCTTGCAACAAAGAGACGATCTCCGACGAAAGACGTGGCTGGGCTACGCGGATGTCACGGCTCAGCTCGGGTGAAGAACGCGGCTCGCGCGGACGTCACGGCTCGGTGGAGAGGCTTCGGCTGGCACGCGATAACCACAGCGGAACTTCGCTTGAACACGAAACGATGGACTTTGGCGCGTTTGGTAGTGTCGGACGATCGAATGTTCACCGGGGATAAGTTGAGTGGCGGCTAG

Protein sequence

MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGWHAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG
Homology
[Close]
BLAST of CsaV3_3G019370 vs. NCBI nr
Match: KGN57617.1 (hypothetical protein Csa_3G229420 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60
          MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW
Sbjct: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60

Query: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 97
          HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG
Sbjct: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 96

[Close]
BLAST of CsaV3_3G019370 vs. TrEMBL
Match: tr|A0A0A0LAE6|A0A0A0LAE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229420 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60
          MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW
Sbjct: 1  MNREDRLALGSVRKKEDTRLATKRRSPTKDVAGLRGCHGSARVKNAARADVTARWRGFGW 60

Query: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 97
          HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG
Sbjct: 61 HAITTAELRLNTKRWTLARLVVSDDRMFTGDKLSGG 96

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57617.12.2e-46100.00hypothetical protein Csa_3G229420 [Cucumis sativus][more]
BLAST of CsaV3_3G019370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAE6|A0A0A0LAE6_CUCSA1.4e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229420 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019370.1CsaV3_3G019370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019370Silver-seed gourdcarcucB0048
CsaV3_3G019370Silver-seed gourdcarcucB0687
CsaV3_3G019370Cucumber (Gy14) v2cgybcucB117
CsaV3_3G019370Cucumber (Gy14) v1cgycucB006
CsaV3_3G019370Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G019370Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G019370Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G019370Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G019370Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G019370Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G019370Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019370Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019370Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019370Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019370Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019370Watermelon (97103) v1cucwmB252
CsaV3_3G019370Watermelon (97103) v2cucwmbB217
CsaV3_3G019370Wax gourdcucwgoB287