CsaV3_3G019050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G019050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	rRNA N-glycosidase
Location	chr3 : 14695372 .. 14696733 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCATTGGAAGAACAATTATGGATTTGTGATTCATCATTCCCCACTACAATAATTTTTTTTGTGATCCTTTTTAATTAGAATAATAATGCTTGTTCCATTCATAATTGTCCACTGGGCTAGCCTTTCGTTGTATTTTGTGTGTATATATACCCCTTCATTCTAGCCCAACTTTGTCAAACAAATATATATAGTCGAATTAAAGTAATCAAAGGATGAAAGAAATTGTGTTGAGCATCATTGTAGCCTTCTCACTCACCACCCAACTTGCCATCGCAGTGCCCCCCAACTATGGATATGGAGTTGGATATGGAGGCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTAGAGATGTCTCCATGGTACAAACCTGCAGGTATTAATTTTCCAACTCGATTATCACCATGTGACGAGAAGAAACAAACTCAATTATGGACGATTGTCGGAGATGGCACAATTCGACCCATGAATGATAAATTTTGCTTGGCTGCTGAAGTTTTTTATGGGGTCATAAATAAAGCAGTAGTAAGTGAGTGTGGTAAAGTATCAGATCCTAACAAGAAATGGACCCAGAAGAATGACGGAACCATAGCCCTCGTCGATTCAAGAATGGTTCTAACAGGAGATTTAGACTATGTGACATTGCAAAGTAACAAATATACACCATCACAAAGTTGGGAAGTCACGGAAAGTTTAAACTCAATGGTTGCAAACATCGAATGGCTTAACAACTTGTGTTTGCAATCCACAGACGATTCAAGTCATGTGGGATTGAATGGATGTAATACAGACAATAAGTACCAAAGATGGGCATTGTATGCAGATGGAACCATTCGACAACATGTGAACAAAAACTATTGCTTGACTTCTGACCAAGATTTTGGTCGCTTTGTAGTTGTGTCTAAATGTGAAGACAAACCGCAACAACGTTGGAGTCTTGATGCTAAAGACTATACTATTGACCATCCCAACACTGACATGGTCCTAGATGTGTTTAGTGTGCCTGATTCTACTTTTCCGTCAGTACTCGTTACGAACCGTCGTGATGGAAGTGCTAGCCAAAGATGGACTATTATTAACTAATGAATCAGATAAATAAGATAGGGGAGATGTGAATCCACACGAACTCATGCATGCAAATGCCTTTCTACTTCTTTAACTCTCTTTCTAATGCTTAATGTATGAACATCAATAAATTAATAAGATAAGTGTGGATTTATGTGTTTAATTCTCTGGTGATCAAAGATATTTCGTTCCATACTAAATTATGAGTGAAGGTAAAACCGTAAAAGTATTAAGCTTTAATGTTTGCAATAAATAAATATACCACCACACATTATAAAATCAAG

mRNA sequence

ATGAAAGAAATTGTGTTGAGCATCATTGTAGCCTTCTCACTCACCACCCAACTTGCCATCGCAGTGCCCCCCAACTATGGATATGGAGTTGGATATGGAGGCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTAGAGATGTCTCCATGGTACAAACCTGCAGGTATTAATTTTCCAACTCGATTATCACCATGTGACGAGAAGAAACAAACTCAATTATGGACGATTGTCGGAGATGGCACAATTCGACCCATGAATGATAAATTTTGCTTGGCTGCTGAAGTTTTTTATGGGGTCATAAATAAAGCAGTAGTAAGTGAGTGTGGTAAAGTATCAGATCCTAACAAGAAATGGACCCAGAAGAATGACGGAACCATAGCCCTCGTCGATTCAAGAATGGTTCTAACAGGAGATTTAGACTATGTGACATTGCAAAGTAACAAATATACACCATCACAAAGTTGGGAAGTCACGGAAAGTTTAAACTCAATGGTTGCAAACATCGAATGGCTTAACAACTTGTGTTTGCAATCCACAGACGATTCAAGTCATGTGGGATTGAATGGATGTAATACAGACAATAAGTACCAAAGATGGGCATTGTATGCAGATGGAACCATTCGACAACATGTGAACAAAAACTATTGCTTGACTTCTGACCAAGATTTTGGTCGCTTTGTAGTTGTGTCTAAATGTGAAGACAAACCGCAACAACGTTGGAGTCTTGATGCTAAAGACTATACTATTGACCATCCCAACACTGACATGGTCCTAGATGTGTTTAGTGTGCCTGATTCTACTTTTCCGTCAGTACTCGTTACGAACCGTCGTGATGGAAGTGCTAGCCAAAGATGGACTATTATTAACTAA

Coding sequence (CDS)

ATGAAAGAAATTGTGTTGAGCATCATTGTAGCCTTCTCACTCACCACCCAACTTGCCATCGCAGTGCCCCCCAACTATGGATATGGAGTTGGATATGGAGGCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTAGAGATGTCTCCATGGTACAAACCTGCAGGTATTAATTTTCCAACTCGATTATCACCATGTGACGAGAAGAAACAAACTCAATTATGGACGATTGTCGGAGATGGCACAATTCGACCCATGAATGATAAATTTTGCTTGGCTGCTGAAGTTTTTTATGGGGTCATAAATAAAGCAGTAGTAAGTGAGTGTGGTAAAGTATCAGATCCTAACAAGAAATGGACCCAGAAGAATGACGGAACCATAGCCCTCGTCGATTCAAGAATGGTTCTAACAGGAGATTTAGACTATGTGACATTGCAAAGTAACAAATATACACCATCACAAAGTTGGGAAGTCACGGAAAGTTTAAACTCAATGGTTGCAAACATCGAATGGCTTAACAACTTGTGTTTGCAATCCACAGACGATTCAAGTCATGTGGGATTGAATGGATGTAATACAGACAATAAGTACCAAAGATGGGCATTGTATGCAGATGGAACCATTCGACAACATGTGAACAAAAACTATTGCTTGACTTCTGACCAAGATTTTGGTCGCTTTGTAGTTGTGTCTAAATGTGAAGACAAACCGCAACAACGTTGGAGTCTTGATGCTAAAGACTATACTATTGACCATCCCAACACTGACATGGTCCTAGATGTGTTTAGTGTGCCTGATTCTACTTTTCCGTCAGTACTCGTTACGAACCGTCGTGATGGAAGTGCTAGCCAAAGATGGACTATTATTAACTAA

Protein sequence

MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN

Homology

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BLAST of CsaV3_3G019050 vs. NCBI nr
Match: NP_001274403.1 (uncharacterized protein LOC101221335 precursor [Cucumis sativus] >BAA88294.1 XSP30 [Cucumis sativus])

HSP 1 Score: 615.9 bits (1587), Expect = 7.0e-173
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120
           NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK
Sbjct: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120

Query: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180
           KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL
Sbjct: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180

Query: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240
           QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP
Sbjct: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240

Query: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 294
           QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN
Sbjct: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 293

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BLAST of CsaV3_3G019050 vs. NCBI nr
Match: KGN57579.1 (hypothetical protein Csa_3G217160 [Cucumis sativus])

HSP 1 Score: 614.4 bits (1583), Expect = 2.0e-172
Identity = 292/293 (99.66%), Postives = 292/293 (99.66%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTTQL IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120
           NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK
Sbjct: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120

Query: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180
           KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL
Sbjct: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180

Query: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240
           QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP
Sbjct: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240

Query: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 294
           QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN
Sbjct: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 293

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BLAST of CsaV3_3G019050 vs. NCBI nr
Match: XP_004151509.2 (PREDICTED: nigrin b-like [Cucumis sativus] >KGN57577.1 hypothetical protein Csa_3G217140 [Cucumis sativus])

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144
Identity = 252/293 (86.01%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEM--SPWYKPA 60
           MKEIVLSIIVAFSLTTQL IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEM     YKPA
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMVLLRSYKPA 60

Query: 61  GINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDP 120
           GINFPTRL PCDEKKQTQLWT+VGDGTIRPMND+FCLAA+VFYGVINKAVVSECGKVSD 
Sbjct: 61  GINFPTRLLPCDEKKQTQLWTVVGDGTIRPMNDRFCLAADVFYGVINKAVVSECGKVSDS 120

Query: 121 NKKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNL 180
           NK+W  KNDGTIAL +SRMVLTGD DYVTLQS KYTPSQSWEVTESLN MVANIEWLNNL
Sbjct: 121 NKQWIHKNDGTIALAESRMVLTGDSDYVTLQSIKYTPSQSWEVTESLNPMVANIEWLNNL 180

Query: 181 CLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCED 240
           CLQSTDDSS+VGLNGCNT  KYQRWALYADGTIRQHVN+NYCLTS+Q++ R VVVSKCED
Sbjct: 181 CLQSTDDSSNVGLNGCNTYTKYQRWALYADGTIRQHVNRNYCLTSEQNYDRSVVVSKCED 240

Query: 241 KPQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           KPQQRWSL+AKD TIDHPNT+MVLDV +V DS  P V+VTN  DGSASQRWT+
Sbjct: 241 KPQQRWSLNAKDSTIDHPNTNMVLDVLNVLDSASPLVIVTNHPDGSASQRWTM 293

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BLAST of CsaV3_3G019050 vs. NCBI nr
Match: XP_016901886.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 229/292 (78.42%), Postives = 249/292 (85.27%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTT LA+AVP NYGYG  YGGVP ATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFY-RGN 60

Query: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120
           NFPTRLSPCDE KKQTQLWT+VGDGTIRPMNDKFCL A+V  G+INKAVV EC K  + N
Sbjct: 61  NFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSN 120

Query: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180
           K+WT K DGTI  V+S MVLTGD DYVTLQSNK TPSQSWE TES   M+ANIEWLNNLC
Sbjct: 121 KRWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLC 180

Query: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240
           LQSTDDS+HVGLNGCN +NK QRWALY DGTIRQ+VN+NYCLTSD+  GRF+V+SKCEDK
Sbjct: 181 LQSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDK 240

Query: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           PQQRW+L AKD TIDHPN+DMV+DV  VP   F S +VTNRRDGSASQRWTI
Sbjct: 241 PQQRWNLGAKDSTIDHPNSDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

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BLAST of CsaV3_3G019050 vs. NCBI nr
Match: XP_004146289.1 (PREDICTED: nigrin b-like [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_3G219180 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 3.4e-111
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSI+VAFSLTT LA+AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60

Query: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120

Query: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180

Query: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240

Query: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 287

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BLAST of CsaV3_3G019050 vs. Swiss-Prot
Match: sp|P33183|NIGB_SAMNI (Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-27
Identity = 74/230 (32.17%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 40  HLVGRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEV 99
           ++VGRDGLC+++   Y   G   P +L PC  ++  Q WT   D TIR M    C+ A  
Sbjct: 311 NIVGRDGLCVDVRNGYDTDGT--PLQLWPCGTQR-NQRWTFDSDDTIRSMGK--CMTANG 370

Query: 100 FYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMVLT----GDLDYVTLQSNKYTP 159
                N  V+  C   ++   KW    DG+I    S +V+T         + L+ N Y  
Sbjct: 371 LNNGSN-IVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAA 430

Query: 160 SQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHV 219
           SQ W VT ++  +VA+I     +CLQS  +++ V +  C   +  Q+WALY D TIR + 
Sbjct: 431 SQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNS 490

Query: 220 NKNYCLTSD-QDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDV 265
            +  C+T++  +    +++ KC+  P QRW  ++ D  I +P +  V+DV
Sbjct: 491 TRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNS-DGAIVNPKSRHVMDV 533

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BLAST of CsaV3_3G019050 vs. Swiss-Prot
Match: sp|Q41358|SNAIB_SAMNI (Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-25
Identity = 80/252 (31.75%), Postives = 123/252 (48.81%), Query Frame = 0


Query: 43  GRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYG 102
           G DGLC+++   +   G   P +L PC   +  QLWT   DGTIR +    CL A     
Sbjct: 327 GWDGLCVDVRYGHYIDG--NPVQLRPCG-NECNQLWTFRTDGTIRWLGK--CLTAS---- 386

Query: 103 VINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMVLT----GDLDYVTLQSNKYTPSQS 162
             +  ++ +C  V     KW    DGTI    S +VLT     +   ++L++N +   Q 
Sbjct: 387 --SSVMIYDCNTVPPEATKWVVSIDGTITNPHSGLVLTAPQAAEGTALSLENNIHAARQG 446

Query: 163 WEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKN 222
           W V + +  +V  I     +CL+   +++ V L  C  +   Q WALY DGTIR + N++
Sbjct: 447 WTVGD-VEPLVTFIVGYKQMCLRENGENNFVWLEDCVLNRVQQEWALYGDGTIRVNSNRS 506

Query: 223 YCLTS-DQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLV 282
            C+TS D +    +V+ KCE    QRW  +    TI +PN  +++DV     S    +L 
Sbjct: 507 LCVTSEDHEPSDLIVILKCEGSGNQRWVFNTNG-TISNPNAKLLMDVAQRDVSLRKIILY 563

Query: 283 TNRRDGSASQRW 290
             R  G+ +Q+W
Sbjct: 567 --RPTGNPNQQW 563

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BLAST of CsaV3_3G019050 vs. Swiss-Prot
Match: sp|O22415|SNAIF_SAMNI (Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-24
Identity = 78/252 (30.95%), Postives = 119/252 (47.22%), Query Frame = 0


Query: 43  GRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYG 102
           G DGLC+++   +   G     +L PC   +  QLWT   DGTIR +    CL       
Sbjct: 327 GWDGLCVDVRDGHYIDGNT--VQLGPCG-NECNQLWTFRTDGTIRWLGK--CLTTS---- 386

Query: 103 VINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMVLT----GDLDYVTLQSNKYTPSQS 162
             +  ++ +C  V     KW    DGTI    S +VLT     +   ++L++N +   Q 
Sbjct: 387 --SSVMIYDCNTVPPEATKWVVSTDGTITNPRSGLVLTAPQAAEGTALSLENNIHAARQG 446

Query: 163 WEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKN 222
           W V + +  +V  I     +CL    +++ V L  C  +   Q WALY DGTIR + N++
Sbjct: 447 WTVGD-VEPLVTFIVGYKQMCLTENGENNFVWLEDCVLNRVEQEWALYGDGTIRVNSNRS 506

Query: 223 YCLTS-DQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLV 282
            C+TS D +    +V+ KCE    QRW  +    TI +PN  +V+DV     S    +L 
Sbjct: 507 LCVTSEDHEPSDLIVILKCEGSGNQRWVFNTNG-TISNPNAKLVMDVAQSNVSLRKIILY 563

Query: 283 TNRRDGSASQRW 290
                G+ +Q+W
Sbjct: 567 P--PTGNPNQQW 563

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BLAST of CsaV3_3G019050 vs. Swiss-Prot
Match: sp|P02879|RICI_RICCO (Ricin OS=Ricinus communis OX=3988 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.5e-21
Identity = 82/250 (32.80%), Postives = 118/250 (47.20%), Query Frame = 0


Query: 22  VPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQ-TQLWTI 81
           V PN+   V     P    +VGR+GLC+++       G     +L PC       QLWT+
Sbjct: 309 VVPNFNADVCMDPEP-IVRIVGRNGLCVDVRDGRFHNG--NAIQLWPCKSNTDANQLWTL 368

Query: 82  VGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMVLT 141
             D TIR  N K         GV    ++ +C   +    +W   ++GTI    S +VL 
Sbjct: 369 KRDNTIR-SNGKCLTTYGYSPGVY--VMIYDCNTAATDATRWQIWDNGTIINPRSSLVLA 428

Query: 142 GDL----DYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNT 201
                    +T+Q+N Y  SQ W  T +    V  I  L  LCLQ+  +S  V +  C++
Sbjct: 429 ATSGNSGTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQA--NSGQVWIEDCSS 488

Query: 202 DNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVV-VSKCEDKPQ-QRWSLDAKDYTID 261
           +   Q+WALYADG+IR   N++ CLTSD +    VV +  C      QRW +   D TI 
Sbjct: 489 EKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRW-MFKNDGTIL 548

Query: 262 HPNTDMVLDV 265
           +  + +VLDV
Sbjct: 549 NLYSGLVLDV 549

[Close]

BLAST of CsaV3_3G019050 vs. Swiss-Prot
Match: sp|U3KRF8|SGSL_TRIAN (Seed lectin (Fragments) OS=Trichosanthes anguina OX=50544 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-20
Identity = 63/211 (29.86%), Postives = 107/211 (50.71%), Query Frame = 0


Query: 39  THLVGRDGLCLEMSPWYKPAGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAA- 98
           T + GRD LC++++      G      L PC + +  Q WT   DGT+R +    CLA  
Sbjct: 265 TRISGRDALCVDVAGALTSDGSRL--ILYPCGQ-QVNQKWTFHSDGTVRSLGK--CLATN 324

Query: 99  EVFYGVINKAVVSECGKVSDPNKKWTQKNDGTI--------ALVDSRMVLTGDLDYVTLQ 158
              +G  N  V+ +C K++  +  W     GTI        AL  ++   + +L   T++
Sbjct: 325 NSKFG--NLVVIYDCSKLAAEDISWDVSVGGTIMNPNYEDLALTSNKATRSTNL---TME 384

Query: 159 SNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDNKYQRWALYADG 218
            N Y+ SQ W V   +  ++ +I  L+++CL++TD ++++ L  C  + + Q WALY+DG
Sbjct: 385 VNTYSASQGWRVGNYVQPIIGSIVGLDDMCLEATDGNTNMWLEECVPNQREQSWALYSDG 444

Query: 219 TIRQHVNKNYCLT---SDQDFGRFVVVSKCE 238
           TIR   N+  C+T   S  D  + + +  C+
Sbjct: 445 TIRVDDNRELCVTASSSTYDNWKVITILNCD 465

[Close]

BLAST of CsaV3_3G019050 vs. TrEMBL
Match: tr|Q9SLV9|Q9SLV9_CUCSA (XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 4.6e-173
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120
           NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK
Sbjct: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120

Query: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180
           KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL
Sbjct: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180

Query: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240
           QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP
Sbjct: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240

Query: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 294
           QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN
Sbjct: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 293

[Close]

BLAST of CsaV3_3G019050 vs. TrEMBL
Match: tr|A0A0A0L9D1|A0A0A0L9D1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217160 PE=4 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 1.3e-172
Identity = 292/293 (99.66%), Postives = 292/293 (99.66%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTTQL IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120
           NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK
Sbjct: 61  NFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNK 120

Query: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180
           KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL
Sbjct: 121 KWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCL 180

Query: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240
           QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP
Sbjct: 181 QSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKP 240

Query: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 294
           QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN
Sbjct: 241 QQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTIIN 293

[Close]

BLAST of CsaV3_3G019050 vs. TrEMBL
Match: tr|A0A0A0LAC2|A0A0A0LAC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217140 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.6e-144
Identity = 252/293 (86.01%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEM--SPWYKPA 60
           MKEIVLSIIVAFSLTTQL IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEM     YKPA
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMVLLRSYKPA 60

Query: 61  GINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDP 120
           GINFPTRL PCDEKKQTQLWT+VGDGTIRPMND+FCLAA+VFYGVINKAVVSECGKVSD 
Sbjct: 61  GINFPTRLLPCDEKKQTQLWTVVGDGTIRPMNDRFCLAADVFYGVINKAVVSECGKVSDS 120

Query: 121 NKKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNL 180
           NK+W  KNDGTIAL +SRMVLTGD DYVTLQS KYTPSQSWEVTESLN MVANIEWLNNL
Sbjct: 121 NKQWIHKNDGTIALAESRMVLTGDSDYVTLQSIKYTPSQSWEVTESLNPMVANIEWLNNL 180

Query: 181 CLQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCED 240
           CLQSTDDSS+VGLNGCNT  KYQRWALYADGTIRQHVN+NYCLTS+Q++ R VVVSKCED
Sbjct: 181 CLQSTDDSSNVGLNGCNTYTKYQRWALYADGTIRQHVNRNYCLTSEQNYDRSVVVSKCED 240

Query: 241 KPQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           KPQQRWSL+AKD TIDHPNT+MVLDV +V DS  P V+VTN  DGSASQRWT+
Sbjct: 241 KPQQRWSLNAKDSTIDHPNTNMVLDVLNVLDSASPLVIVTNHPDGSASQRWTM 293

[Close]

BLAST of CsaV3_3G019050 vs. TrEMBL
Match: tr|A0A1S4E0X9|A0A1S4E0X9_CUCME (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 2.2e-130
Identity = 229/292 (78.42%), Postives = 249/292 (85.27%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSIIVAFSLTT LA+AVP NYGYG  YGGVP ATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFY-RGN 60

Query: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120
           NFPTRLSPCDE KKQTQLWT+VGDGTIRPMNDKFCL A+V  G+INKAVV EC K  + N
Sbjct: 61  NFPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSN 120

Query: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180
           K+WT K DGTI  V+S MVLTGD DYVTLQSNK TPSQSWE TES   M+ANIEWLNNLC
Sbjct: 121 KRWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLC 180

Query: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240
           LQSTDDS+HVGLNGCN +NK QRWALY DGTIRQ+VN+NYCLTSD+  GRF+V+SKCEDK
Sbjct: 181 LQSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDK 240

Query: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           PQQRW+L AKD TIDHPN+DMV+DV  VP   F S +VTNRRDGSASQRWTI
Sbjct: 241 PQQRWNLGAKDSTIDHPNSDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of CsaV3_3G019050 vs. TrEMBL
Match: tr|A0A0A0L756|A0A0A0L756_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 2.3e-111
Identity = 200/292 (68.49%), Postives = 230/292 (78.77%), Query Frame = 0


Query: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60
           MKEIVLSI+VAFSLTT LA+AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGS 60

Query: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120
           NFPTRLSPC+E KKQTQLWT++ D TIRPMND++CL + V    I   VVSEC K    N
Sbjct: 61  NFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSN 120

Query: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180
           KKW  K D TI  V S MVLTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLC
Sbjct: 121 KKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180

Query: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240
           LQST DS++V L+GCN++NK Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDK
Sbjct: 181 LQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDK 240

Query: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 292
           PQQRW L A+D TI+HPNTDMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 241 PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 287

The following BLAST results are available for this feature:

BLAST of CsaV3_3G019050 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001274403.1	7.0e-173	100.00	uncharacterized protein LOC101221335 precursor [Cucumis sativus] >BAA88294.1 XSP...	[more]
KGN57579.1	2.0e-172	99.66	hypothetical protein Csa_3G217160 [Cucumis sativus]	[more]
XP_004151509.2	2.3e-144	86.01	PREDICTED: nigrin b-like [Cucumis sativus] >KGN57577.1 hypothetical protein Csa_...	[more]
XP_016901886.1	3.3e-130	78.42	PREDICTED: nigrin b-like [Cucumis melo]	[more]
XP_004146289.1	3.4e-111	68.49	PREDICTED: nigrin b-like [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_...	[more]

BLAST of CsaV3_3G019050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G019050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P33183\|NIGB_SAMNI	4.7e-27	32.17	Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2	[more]
sp\|Q41358\|SNAIB_SAMNI	1.1e-25	31.75	Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1	[more]
sp\|O22415\|SNAIF_SAMNI	2.8e-24	30.95	Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=...	[more]
sp\|P02879\|RICI_RICCO	6.5e-21	32.80	Ricin OS=Ricinus communis OX=3988 PE=1 SV=1	[more]
sp\|U3KRF8\|SGSL_TRIAN	1.9e-20	29.86	Seed lectin (Fragments) OS=Trichosanthes anguina OX=50544 PE=1 SV=2	[more]

BLAST of CsaV3_3G019050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q9SLV9\|Q9SLV9_CUCSA	4.6e-173	100.00	XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1	[more]
tr\|A0A0A0L9D1\|A0A0A0L9D1_CUCSA	1.3e-172	99.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217160 PE=4 SV=1	[more]
tr\|A0A0A0LAC2\|A0A0A0LAC2_CUCSA	1.6e-144	86.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217140 PE=4 SV=1	[more]
tr\|A0A1S4E0X9\|A0A1S4E0X9_CUCME	2.2e-130	78.42	nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1	[more]
tr\|A0A0A0L756\|A0A0A0L756_CUCSA	2.3e-111	68.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035992	Ricin_B-like_lectins
IPR000772	Ricin_B_lectin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G019050.1	CsaV3_3G019050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	SMART	SM00458	ricin_3	coord: 36..162 e-value: 4.5E-9 score: 46.1 coord: 166..292 e-value: 1.8E-18 score: 77.3
IPR000772	Ricin B, lectin domain	PFAM	PF00652	Ricin_B_lectin	coord: 40..159 e-value: 1.8E-15 score: 57.2 coord: 176..289 e-value: 4.4E-23 score: 81.8
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 35..162 score: 20.413
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 176..292 score: 26.38
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 40..160 e-value: 2.06121E-17 score: 75.2346
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 176..291 e-value: 5.57673E-21 score: 85.2498
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 167..293 e-value: 5.3E-30 score: 105.7
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 36..162 e-value: 7.4E-20 score: 73.0
IPR035992	Ricin B-like lectins	SUPERFAMILY	SSF50370	Ricin B-like lectins	coord: 40..164
IPR035992	Ricin B-like lectins	SUPERFAMILY	SSF50370	Ricin B-like lectins	coord: 173..291

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G019050	Silver-seed gourd	carcucB0070
CsaV3_3G019050	Silver-seed gourd	carcucB0071
CsaV3_3G019050	Silver-seed gourd	carcucB0687
CsaV3_3G019050	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G019050	Cucumber (Gy14) v1	cgycucB006
CsaV3_3G019050	Cucurbita maxima (Rimu)	cmacucB0373
CsaV3_3G019050	Cucurbita maxima (Rimu)	cmacucB0829
CsaV3_3G019050	Cucurbita moschata (Rifu)	cmocucB0370
CsaV3_3G019050	Cucurbita moschata (Rifu)	cmocucB0814
CsaV3_3G019050	Cucurbita pepo (Zucchini)	cpecucB0247
CsaV3_3G019050	Cucurbita pepo (Zucchini)	cpecucB0484
CsaV3_3G019050	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G019050	Bottle gourd (USVL1VR-Ls)	cuclsiB230
CsaV3_3G019050	Melon (DHL92) v3.5.1	cucmeB247
CsaV3_3G019050	Melon (DHL92) v3.6.1	cucmedB246
CsaV3_3G019050	Watermelon (Charleston Gray)	cucwcgB238
CsaV3_3G019050	Watermelon (97103) v1	cucwmB252
CsaV3_3G019050	Watermelon (97103) v2	cucwmbB217
CsaV3_3G019050	Wax gourd	cucwgoB287