CsaV3_3G019000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019000
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14659348 .. 14660724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGTATGCCCATTGTTTAAGCTAACACACAAATATTTTCTTCACAATCTAATCTCTGTTGCTTACTCTCTCTGTATTCTATTTGCTTACTCCTTTGTTTCAGTTCGGATTACTGAGATAATTGCAATCGAAATACCTTTTTGGAACATCAAAGTTTTCTTCCATTTGTTAACTGTTCCTGTTGGATTCTGGATTTTCCTTTATGTGACGTTATTATAACTACAGCAATGGGGTCTATTCCACATAATTTGTGTCCACCCCCACATAGAATTTCTGAAGAGATCATCCAATTTAGAACTTTTTCAGACTTTTGTTGGTATAGATAGATAGGAATTGGATCATTTAATTATTTTGAAGTTTCTTATATCATATTTGTACAAGTTTAGAGGCCTCTTTGTCAAATGAGTCATAACTGTGTTTGGTTGTAGCCTAACCTAAGAACATCAAATAGGAAGAAACATCACGTACCCTAATCTTTGACTCAGAGAGAGATCAATAAGATTTTAGAAACAAAGAAACAAATGTAAAAATTTTTCCTTAGAGCTACAAAGTGCTTGACAGAAACTTACACATCTAAAGTTAGTTGAAGAAATCGATGATTTTTCTACTTGGATTTGGAACAGAACAACTATGCAATTCTTAAGGTTAAGGTCTTCATTGTTTTTGCTATGAACATGGAGAGATCAATGTCTGCTCATTTTTGCCTCTTGATTTGGGTATAAAAAAAGTATGGTTACGATTATCTTTCTATTTGATATGATGGCAAGGTCTCAACTAGAAGTTTTTTTTTATAGCAATAGAAGGTGCGCTTTTGTTGTACTCTACTCTAAAACTTTAAATTTAGTGTTTAGAGGTCGTTAAGAAAATCTGTCCCCGAGATATTGTGTTGGTTATTGGTAGGTCGCTGTTATAGTTCGAGGAATATAATAGTGATCTGGTTGGGATGATAACTATTTTAGTTGGTAATAGTAAACACAGTAACAAAGAGGGATAGAGATGATGAGTGAAAAATGGTAAATATGAAGCATGATACATCAATTATTATAATTGGAATTTCGAACATGGAGTAGGTTGTAATAGCTCAGTTCACTCACTTGAAGCCTGCCTGTTGAGTTTGACATCTGTCTTCTCCGAAAATTTCCCTCTCACCTACCAACACGCTTACAGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

mRNA sequence

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Coding sequence (CDS)

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Protein sequence

MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSGALTRGFEFQC
Homology
[Close]
BLAST of CsaV3_3G019000 vs. NCBI nr
Match: KGN57575.1 (hypothetical protein Csa_3G215630 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

[Close]
BLAST of CsaV3_3G019000 vs. TrEMBL
Match: tr|A0A0A0L6J5|A0A0A0L6J5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G215630 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPXXXXXXXXXXPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57575.11.5e-25100.00hypothetical protein Csa_3G215630 [Cucumis sativus][more]
BLAST of CsaV3_3G019000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6J5|A0A0A0L6J5_CUCSA1.0e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G215630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010582 floral meristem determinacy
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019000.1CsaV3_3G019000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019000CsGy3G018770Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019000Silver-seed gourdcarcucB0070
CsaV3_3G019000Silver-seed gourdcarcucB0071
CsaV3_3G019000Silver-seed gourdcarcucB0687
CsaV3_3G019000Cucumber (Gy14) v1cgycucB006
CsaV3_3G019000Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G019000Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G019000Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G019000Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G019000Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G019000Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G019000Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019000Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019000Melon (DHL92) v3.5.1cucmeB240
CsaV3_3G019000Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019000Melon (DHL92) v3.6.1cucmedB240
CsaV3_3G019000Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019000Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019000Watermelon (97103) v1cucwmB252
CsaV3_3G019000Watermelon (97103) v2cucwmbB217
CsaV3_3G019000Wax gourdcucwgoB287