CsaV3_3G018760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018760
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14474795 .. 14475130 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTAGGGCATTCTCTCCTCTTTTCCTTCTCCCTTTTCCTTTCTCTCGTCGCCTTGGTTCTCTTCTTGCTCGGTGTATTGTGTTTCCAGCCCTACAAATCCGTCACTCCCTGATTCCAATCTTCCTTCTCTGCACCGCGCCCCATCGCACATCTTCTCATTTTCTGGGTCTCCTTCGACCCTCCCCGGAGCTAGGGTTTCTAGACATTCCCAGAGGTTCAGGCACACCAATTTGGAGCATTGACGCATGCTTTTATCCTTTTATGGAAGCCACGGCCGCAACGCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCGAATAA

mRNA sequence

ATGAAGATTAGGGCATTCTCTCCTCTTTTCCTTCTCCCTTTTCCTTTCTCTCGTCGCCTTGGTTCTCTTCTTGCTCGGTGTATTGTGTTTCCAGCCCTACAAATCCGTCACTCCCTGATTCCAATCTTCCTTCTCTGCACCGCGCCCCATCGCACATCTTCTCATTTTCTGGGTCTCCTTCGACCCTCCCCGGAGCTAGGGTTTCTAGACATTCCCAGAGGTTCAGGCACACCAATTTGGAGCATTGACGCATGCTTTTATCCTTTTATGGAAGCCACGGCCGCAACGCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCGAATAA

Coding sequence (CDS)

ATGAAGATTAGGGCATTCTCTCCTCTTTTCCTTCTCCCTTTTCCTTTCTCTCGTCGCCTTGGTTCTCTTCTTGCTCGGTGTATTGTGTTTCCAGCCCTACAAATCCGTCACTCCCTGATTCCAATCTTCCTTCTCTGCACCGCGCCCCATCGCACATCTTCTCATTTTCTGGGTCTCCTTCGACCCTCCCCGGAGCTAGGGTTTCTAGACATTCCCAGAGGTTCAGGCACACCAATTTGGAGCATTGACGCATGCTTTTATCCTTTTATGGAAGCCACGGCCGCAACGCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCGAATAA

Protein sequence

MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLLRPSPELGFLDIPRGSGTPIWSIDACFYPFMEATAATRGASLTMHSPQLSRE
Homology
[Close]
BLAST of CsaV3_3G018760 vs. NCBI nr
Match: KGN57554.1 (hypothetical protein Csa_3G211980 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL 60
          MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL
Sbjct: 1  MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL 60

Query: 61 RPSPELGFLDIPRGSGTPIWSIDACFYPFMEATAA 96
          RPSPELGFLDIPRG GTPIWSIDACFYPFMEATAA
Sbjct: 61 RPSPELGFLDIPRGLGTPIWSIDACFYPFMEATAA 95

[Close]
BLAST of CsaV3_3G018760 vs. TrEMBL
Match: tr|A0A0A0L9B2|A0A0A0L9B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G211980 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.7e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL 60
          MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL
Sbjct: 1  MKIRAFSPLFLLPFPFSRRLGSLLARCIVFPALQIRHSLIPIFLLCTAPHRTSSHFLGLL 60

Query: 61 RPSPELGFLDIPRGSGTPIWSIDACFYPFMEATAA 96
          RPSPELGFLDIPRG GTPIWSIDACFYPFMEATAA
Sbjct: 61 RPSPELGFLDIPRGLGTPIWSIDACFYPFMEATAA 95

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018760 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57554.11.5e-4698.95hypothetical protein Csa_3G211980 [Cucumis sativus][more]
BLAST of CsaV3_3G018760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018760 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9B2|A0A0A0L9B2_CUCSA9.7e-4798.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G211980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018760.1CsaV3_3G018760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018760Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018760Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018760Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018760Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018760Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018760Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018760Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018760Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018760Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018760Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018760Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018760Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018760Watermelon (97103) v1cucwmB252
CsaV3_3G018760Watermelon (97103) v2cucwmbB217
CsaV3_3G018760Wax gourdcucwgoB287
CsaV3_3G018760Silver-seed gourdcarcucB0403
CsaV3_3G018760Silver-seed gourdcarcucB0687