CsaV3_3G018530 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G018530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionautophagy 2
Locationchr3 : 14268380 .. 14269212 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCATGGAACATCGCAAAGACGGCGGAGGCGATGTTCTCAAAATTCGCCGTTAAAAGGCTGTGCAAATTTCTACTCAAAAAGAAATTGGGACAGTTTTTGTTGGGAGAAATTGATATCGACCAGCTTGACGTGCAGCTTGCCGATGGCACAATTCAGCTCAACGACCTTGCCCTCAACGTTGATTTTCTCAATGAGAAGGTTTGTTTGTTTGTTTTTTACTTTTTTTTTTCCCCACTTTTTATTTTTTAACGGGGGCATTGGAGAGTGTTGCTCCAATATGAGCGTGGAGGAAAAGTGTTCGGTGAAGTTAAATGGGGAAAAATGATAGAGATGGCTTTGTGTGAAAGGAAATTTATGGGATTGAAAGGTGTGATTAACTGAGGGTTTTATCAAGGTGGCAAACAAAGGGCATAATGACCAACGAAGCTGACACTGAATTTTACCTCGACCAGAAGTTTGTGAGCAATTACCCCAACGCTCCTGCTGATTGAGCCATTGCGAACCAAGAATTCCAGAAATTTGATTAAAAATTTTGTTTACTGTTTTTGAAAAAAAAAAAAAAGATTCAGCCTTTGTTTCTCCATGATAGATGGTTGAATTGTTTAGTTTGGTAGATAAGGATTGAGAGACATTTGGTATCATTTAAGGGATTATCAAAATCTGTTAGGAATGGAGGCAAAGGAGGGTGGTTGATACATGCCAACCCGAGGTTGAGGAGTGGTAAAAACAGAGGGTGTAGAGCAAAAATAGTTGTTGTCGGTGGAAATAGGACAGGATTAATTGAGACATTTGGGGTTACCCGTCAGCAAACAGTGGGATGGGCATAA

mRNA sequence

ATGTTTCCATGGAACATCGCAAAGACGGCGGAGGCGATGTTCTCAAAATTCGCCGTTAAAAGGCTGTGCAAATTTCTACTCAAAAAGAAATTGGGACAGTTTTTGTTGGGAGAAATTGATATCGACCAGCTTGACGTGCAGCTTGCCGATGGCACAATTCAGCTCAACGACCTTGCCCTCAACATAAGGATTGAGAGACATTTGGTATCATTTAAGGGATTATCAAAATCTGTTAGGAATGGAGGCAAAGGAGGGTGGTTGATACATGCCAACCCGAGGTTGAGGAGTGGTAAAAACAGAGGGTGTAGAGCAAAAATAGTTGTTGTCGGTGGAAATAGGACAGGATTAATTGAGACATTTGGGGTTACCCGTCAGCAAACAGTGGGATGGGCATAA

Coding sequence (CDS)

ATGTTTCCATGGAACATCGCAAAGACGGCGGAGGCGATGTTCTCAAAATTCGCCGTTAAAAGGCTGTGCAAATTTCTACTCAAAAAGAAATTGGGACAGTTTTTGTTGGGAGAAATTGATATCGACCAGCTTGACGTGCAGCTTGCCGATGGCACAATTCAGCTCAACGACCTTGCCCTCAACATAAGGATTGAGAGACATTTGGTATCATTTAAGGGATTATCAAAATCTGTTAGGAATGGAGGCAAAGGAGGGTGGTTGATACATGCCAACCCGAGGTTGAGGAGTGGTAAAAACAGAGGGTGTAGAGCAAAAATAGTTGTTGTCGGTGGAAATAGGACAGGATTAATTGAGACATTTGGGGTTACCCGTCAGCAAACAGTGGGATGGGCATAA

Protein sequence

MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLALNIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKIVVVGGNRTGLIETFGVTRQQTVGWA
BLAST of CsaV3_3G018530 vs. NCBI nr
Match: XP_011651243.1 (PREDICTED: uncharacterized protein LOC101223109 isoform X1 [Cucumis sativus] >KGN57532.1 hypothetical protein Csa_3G207330 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 73/108 (67.59%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60

Query: 61  NIRIERHLVSFKGLSKSV--RNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V   G + SV  + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKV---GTAASVIFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. NCBI nr
Match: XP_011651244.1 (PREDICTED: uncharacterized protein LOC101223109 isoform X2 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 73/108 (67.59%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60

Query: 61  NIRIERHLVSFKGLSKSV--RNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V   G + SV  + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKV---GTAASVIFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. NCBI nr
Match: XP_008456130.1 (PREDICTED: autophagy-related protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 4.9e-25
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQL+DLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLSDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V     S + + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKVG-TAASVTFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. NCBI nr
Match: XP_008456131.1 (PREDICTED: autophagy-related protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 4.9e-25
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQL+DLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLSDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V     S + + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKVG-TAASVTFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. NCBI nr
Match: XP_022942300.1 (autophagy-related protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 7.1e-24
Identity = 69/106 (65.09%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MF WNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQL+DLAL
Sbjct: 1   MFTWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLSDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V    L  + + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKVGTAAL-VTFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. TAIR10
Match: AT3G19190.1 (autophagy 2)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 44/62 (70.97%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
          +FPWNIAK+AE  FS++AVKR+ KFLLKKKLG+ +LG+ID+DQLD+QL DGTIQL+DLA+
Sbjct: 2  VFPWNIAKSAEEAFSRWAVKRVVKFLLKKKLGKLILGDIDLDQLDIQLRDGTIQLSDLAI 61

Query: 61 NI 63
          N+
Sbjct: 62 NV 63

BLAST of CsaV3_3G018530 vs. Swiss-Prot
Match: sp|F8S296|ATG2_ARATH (Autophagy-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ATG2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 44/62 (70.97%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
          +FPWNIAK+AE  FS++AVKR+ KFLLKKKLG+ +LG+ID+DQLD+QL DGTIQL+DLA+
Sbjct: 2  VFPWNIAKSAEEAFSRWAVKRVVKFLLKKKLGKLILGDIDLDQLDIQLRDGTIQLSDLAI 61

Query: 61 NI 63
          N+
Sbjct: 62 NV 63

BLAST of CsaV3_3G018530 vs. TrEMBL
Match: tr|A0A0A0LAA0|A0A0A0LAA0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207330 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 73/108 (67.59%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60

Query: 61  NIRIERHLVSFKGLSKSV--RNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V   G + SV  + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKV---GTAASVIFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. TrEMBL
Match: tr|A0A1S3C2I1|A0A1S3C2I1_CUCME (autophagy-related protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496161 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQL+DLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLSDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V     S + + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKVG-TAASVTFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. TrEMBL
Match: tr|A0A1S3C375|A0A1S3C375_CUCME (autophagy-related protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496161 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQL+DLAL
Sbjct: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLSDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+      V     S + + G  G  LI          +RGC  +I
Sbjct: 61  NVDFLNEKVG-TAASVTFKEGSIGSLLIR-----MPWTSRGCEVEI 100

BLAST of CsaV3_3G018530 vs. TrEMBL
Match: tr|W9SML8|W9SML8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027544 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAK+AEAMFS++AVKR+CKF LKKKLGQFLLGEIDIDQLDVQL++GTIQLNDLAL
Sbjct: 1   MFPWNIAKSAEAMFSRWAVKRVCKFFLKKKLGQFLLGEIDIDQLDVQLSEGTIQLNDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+    +   F  ++  +   G  G L+   P     K RGC  ++
Sbjct: 61  NVDFLNN--KFGAVTSILIKEGSIGSLLVKMP----WKGRGCTVEV 100

BLAST of CsaV3_3G018530 vs. TrEMBL
Match: tr|A0A2P5CQS3|A0A2P5CQS3_9ROSA (Autophagy-related protein OS=Trema orientalis OX=63057 GN=TorRG33x02_276320 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 1   MFPWNIAKTAEAMFSKFAVKRLCKFLLKKKLGQFLLGEIDIDQLDVQLADGTIQLNDLAL 60
           MFPWNIAK+AEAMFS++AVKR+CKF LKKKLGQFLLG+IDIDQLDVQL+ GTIQLNDLAL
Sbjct: 1   MFPWNIAKSAEAMFSRWAVKRVCKFFLKKKLGQFLLGDIDIDQLDVQLSRGTIQLNDLAL 60

Query: 61  NIRIERHLVSFKGLSKSVRNGGKGGWLIHANPRLRSGKNRGCRAKI 107
           N+    H +     S  V+ G  G  L+         + +GC  ++
Sbjct: 61  NVDFLNHRLGAVA-SVMVKEGSIGSLLVR-----MPWRGKGCTVEV 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011651243.12.9e-2567.59PREDICTED: uncharacterized protein LOC101223109 isoform X1 [Cucumis sativus] >KG... [more]
XP_011651244.12.9e-2567.59PREDICTED: uncharacterized protein LOC101223109 isoform X2 [Cucumis sativus][more]
XP_008456130.14.9e-2566.04PREDICTED: autophagy-related protein 2 isoform X1 [Cucumis melo][more]
XP_008456131.14.9e-2566.04PREDICTED: autophagy-related protein 2 isoform X2 [Cucumis melo][more]
XP_022942300.17.1e-2465.09autophagy-related protein 2 isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G19190.11.2e-2070.97autophagy 2[more]
Match NameE-valueIdentityDescription
sp|F8S296|ATG2_ARATH2.1e-1970.97Autophagy-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ATG2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LAA0|A0A0A0LAA0_CUCSA1.9e-2567.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207330 PE=4 SV=1[more]
tr|A0A1S3C2I1|A0A1S3C2I1_CUCME3.2e-2566.04autophagy-related protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496161 P... [more]
tr|A0A1S3C375|A0A1S3C375_CUCME3.2e-2566.04autophagy-related protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496161 P... [more]
tr|W9SML8|W9SML8_9ROSA1.2e-2259.43Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027544 PE=4 SV=1[more]
tr|A0A2P5CQS3|A0A2P5CQS3_9ROSA3.4e-2257.55Autophagy-related protein OS=Trema orientalis OX=63057 GN=TorRG33x02_276320 PE=4... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030242pexophagy
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR026886ATG2_fungi/plants
IPR026849ATG2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030242 pexophagy
biological_process GO:0006914 autophagy
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018530.1CsaV3_3G018530.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026849Autophagy-related protein 2PANTHERPTHR13190FAMILY NOT NAMEDcoord: 10..62
IPR026886Autophagy-related protein 2, fungi/plantsPANTHERPTHR13190:SF1AUTOPHAGY-RELATED 2, ISOFORM Acoord: 10..62

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018530Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018530Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018530Silver-seed gourdcarcucB0236
CsaV3_3G018530Silver-seed gourdcarcucB0403
CsaV3_3G018530Silver-seed gourdcarcucB0687
CsaV3_3G018530Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018530Cucumber (Gy14) v2cgybcucB329
CsaV3_3G018530Cucumber (Gy14) v1cgycucB123
CsaV3_3G018530Cucumber (Gy14) v1cgycucB338
CsaV3_3G018530Cucumber (Gy14) v1cgycucB369
CsaV3_3G018530Cucurbita maxima (Rimu)cmacucB0145
CsaV3_3G018530Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018530Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018530Cucurbita moschata (Rifu)cmocucB0133
CsaV3_3G018530Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018530Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018530Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018530Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018530Cucurbita pepo (Zucchini)cpecucB0302
CsaV3_3G018530Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018530Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018530Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018530Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018530Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018530Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018530Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018530Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018530Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018530Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018530Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018530Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018530Watermelon (97103) v1cucwmB279
CsaV3_3G018530Watermelon (97103) v2cucwmbB201