CsaV3_3G017290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G017290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 12961025 .. 12962613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAGTCGCGATTTCTTCGACGACGGAGCAAAAAACATCGATGGCTGCTCCGGCGACGATTGGTGGAGCCCGCCCCTGACTGTGATAGATTGGATACAATGAAATTGATAGGACAAATGGTATATTTTGTTGAGGGATGGTTCTTAAAAGTTTTAGGGTTAAAAATCTGTTCAATTATTACTAACCCTTATCCCAATTTGTCCATTAGTTTGAAAAAAAAGCTTCACGATCTTCACAATTAATTGTATGTGATGAAATGAACGGCTAATATGCTGAACACATCGATGAATAGTATTTGTTTCAATTTTTATTTTTAGCTACGAAAATGTAAATAGGAGTTACATTTATTAATGGATTTAGGAATCTCATTCCCAGATAACTTGAACAGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGGTAGGCATTATTTTATATAAAAGCCGAGAGCTCACCATGTGGACAGAAATGAAGTTTGTTCAACTTTTTGTTTCCTCTCAATTACTGTGAGAACCTCCATAATATCCATTTTTTTTTATTTGATTCCTATTCGTTTTCGAACAGAAAGAGCAAGATTTGATCTCTTCTTTTTTGGATCCAGATGCAAACAATTTTTTCTGTAAGTTCTTTTAAGCTTTCACTAAGGAGGTTACAAAAGTTGATTCGTCTTTATAGTTTTTGATGATCTGTTTTCAATGGTAGTGTATCAATTTGCAGTCCATTTTTACACACTTTCCTCTTTTGATGTTGGGGCCCTCTTAATCTTTTGTCTTTTAAACTTGAATTTGTTAAACTTCTCAATCTGGGATGTATTTGTATTGGTTGTATTGGAGGTTTTGAAGTTCCATTTTTAAGCCATGAGAGCTTAGAGCCGCCCTTTCCTGAAGTATTTGAAAAACCCGCATTTACTTTTTGTAATTTAATCTAATTTTGCTACCTTTAATTTGGTTCCCATCTCTTATTCTTATTGGTCAATGAATTTCGTATTTCCACTATTATTCTTTGAAGATTTGGGTTCTTAATTCCATGGCAATGGCTACTTAGAAACTAATGTCACTACCCAAATACGATCCAGTTGGTAATCTGTTTTAGAAGTGGGTGAAAAAGCAGAGTGTCTAGTACTGTTGGATACCATGCTCTTTTCTATACAATTGTATGAGTCCTACTTCTAAAAGTTCTAGCTATTAGATTAATATTCATTCCCAATATATTGCTTGAACTTTTTCTAAATTAATGTTACATGGCAAGTGGACTTCTTATCTTCAAAGTTAAAATATAGAAGAAATGGGTACAAGTTGGCTCAATCAACATTTATCTCTTAGAGTTTAGCTTTTAGAAAGTTAGATGGTTCATATATAAATTCTTCACTGATGGTTTATGTTCAGAAATTTTGTCATCGTTTCAAGCTAAATAGCAGGTTCCTTGTAGTACTGTTTTTTTTCCCTTGTCTCCCTTATCCTTGCATTCTATCATTTTGGTTATAGTTTATTTTTGTTCATATGACTCTGTTTAAGTTATTTAAACTAATTTTTCTTCTCAGCTTGGCTTGGATGAGTAGTTGA

mRNA sequence

ATGAGAAAGTCGCGATTTCTTCGACGACGGAGCAAAAAACATCGATGGCTGCTCCGGCGACGATTGGTGGAGCCCGCCCCTGACTGTGATAGATTGGATACAATGAAATTGATAGGACAAATGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGAAAGAGCAAGATTTGATCTCTTCTTTTTTGGATCCAGATGCAAACAATTTTTTCTCTTGGCTTGGATGAGTAGTTGA

Coding sequence (CDS)

ATGAGAAAGTCGCGATTTCTTCGACGACGGAGCAAAAAACATCGATGGCTGCTCCGGCGACGATTGGTGGAGCCCGCCCCTGACTGTGATAGATTGGATACAATGAAATTGATAGGACAAATGCTCGACGAAATAGCTATGAAATTGTTTACTGACGCAAAAATTCTGTCGTATGTAGAAAGAGCAAGATTTGATCTCTTCTTTTTTGGATCCAGATGCAAACAATTTTTTCTCTTGGCTTGGATGAGTAGTTGA

Protein sequence

MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVERARFDLFFFGSRCKQFFLLAWMSS
Homology
[Close]
BLAST of CsaV3_3G017290 vs. NCBI nr
Match: KGN57394.1 (hypothetical protein Csa_3G182790 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60
          MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE
Sbjct: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60

Query: 61 RARFDLFFFGSRCKQFFLLAWMSS 85
          RARFDLFFFGSRCKQFFLLAWMSS
Sbjct: 61 RARFDLFFFGSRCKQFFLLAWMSS 84

[Close]
BLAST of CsaV3_3G017290 vs. TrEMBL
Match: tr|A0A0A0L8R6|A0A0A0L8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182790 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60
          MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE
Sbjct: 1  MRKSRFLRRRSKKHRWLLRRRLVEPAPDCDRLDTMKLIGQMLDEIAMKLFTDAKILSYVE 60

Query: 61 RARFDLFFFGSRCKQFFLLAWMSS 85
          RARFDLFFFGSRCKQFFLLAWMSS
Sbjct: 61 RARFDLFFFGSRCKQFFLLAWMSS 84

The following BLAST results are available for this feature:
BLAST of CsaV3_3G017290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57394.12.5e-38100.00hypothetical protein Csa_3G182790 [Cucumis sativus][more]
BLAST of CsaV3_3G017290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8R6|A0A0A0L8R6_CUCSA1.6e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182790 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G017290.1CsaV3_3G017290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G017290Wax gourdcucwgoB290
CsaV3_3G017290Cucumber (Chinese Long) v3cuccucB125
CsaV3_3G017290Silver-seed gourdcarcucB0748
CsaV3_3G017290Silver-seed gourdcarcucB0774
CsaV3_3G017290Silver-seed gourdcarcucB1032
CsaV3_3G017290Cucumber (Gy14) v2cgybcucB117
CsaV3_3G017290Cucumber (Gy14) v2cgybcucB215
CsaV3_3G017290Cucumber (Gy14) v2cgybcucB216
CsaV3_3G017290Cucumber (Gy14) v1cgycucB137
CsaV3_3G017290Cucumber (Gy14) v1cgycucB182
CsaV3_3G017290Cucumber (Gy14) v1cgycucB466
CsaV3_3G017290Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G017290Cucurbita maxima (Rimu)cmacucB0487
CsaV3_3G017290Cucurbita maxima (Rimu)cmacucB0711
CsaV3_3G017290Cucurbita moschata (Rifu)cmocucB0282
CsaV3_3G017290Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G017290Cucurbita moschata (Rifu)cmocucB0476
CsaV3_3G017290Cucurbita moschata (Rifu)cmocucB0697
CsaV3_3G017290Cucurbita moschata (Rifu)cmocucB1041
CsaV3_3G017290Cucurbita pepo (Zucchini)cpecucB0039
CsaV3_3G017290Cucurbita pepo (Zucchini)cpecucB0200
CsaV3_3G017290Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G017290Cucurbita pepo (Zucchini)cpecucB0903
CsaV3_3G017290Wild cucumber (PI 183967)cpicucB144
CsaV3_3G017290Wild cucumber (PI 183967)cpicucB267
CsaV3_3G017290Bottle gourd (USVL1VR-Ls)cuclsiB169
CsaV3_3G017290Bottle gourd (USVL1VR-Ls)cuclsiB227
CsaV3_3G017290Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G017290Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G017290Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G017290Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G017290Watermelon (97103) v1cucwmB239
CsaV3_3G017290Watermelon (97103) v2cucwmbB206
CsaV3_3G017290Watermelon (97103) v2cucwmbB227