CsaV3_3G016840 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G016840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 12638764 .. 12639090 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCAATGAACTGAATGAAGAAACTAAACTAGAAAAGTGTATAAAATCATCACAATGAAGAGAAATCAATTAAAAGAAACCTTGAAAGCTTGAAGAGCTTAGTCAGAGAGAGTCCTTTTTTTCTTGCTTAATTAGGAAACCTGAAATTTCATACAAAAGAGGGAAAGAGGAAGACTCGGAGGGTAACTTGGGTTACGTAGTTGTAGGTAGCGGGAATTGCAACCAGGTAGTGACCGGCTGCATTGATGAACCGGTAATCTTATCACCGACTACTCCCGGTCAATCTCTAAACACGTGTCTTTGCAGTGATCGAGAAACGTAG

mRNA sequence

ATGGCATCCAATGAACTGAATGAAGAAACTAAACTAGAAAAGAAACCTGAAATTTCATACAAAAGAGGGAAAGAGGAAGACTCGGAGGGTAACTTGGGTTACGTAGTTGTAGGTAGCGGGAATTGCAACCAGGTAGTGACCGGCTGCATTGATGAACCGGTAATCTTATCACCGACTACTCCCGGTCAATCTCTAAACACGTGTCTTTGCAGTGATCGAGAAACGTAG

Coding sequence (CDS)

ATGGCATCCAATGAACTGAATGAAGAAACTAAACTAGAAAAGAAACCTGAAATTTCATACAAAAGAGGGAAAGAGGAAGACTCGGAGGGTAACTTGGGTTACGTAGTTGTAGGTAGCGGGAATTGCAACCAGGTAGTGACCGGCTGCATTGATGAACCGGTAATCTTATCACCGACTACTCCCGGTCAATCTCTAAACACGTGTCTTTGCAGTGATCGAGAAACGTAG

Protein sequence

MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTTPGQSLNTCLCSDRET
BLAST of CsaV3_3G016840 vs. NCBI nr
Match: KGN57347.1 (hypothetical protein Csa_3G180350 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT 60
          MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT
Sbjct: 1  MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT 60

Query: 61 PGQSLNTCLCSDRET 76
          PGQSLNTCLCSDRET
Sbjct: 61 PGQSLNTCLCSDRET 75

BLAST of CsaV3_3G016840 vs. TrEMBL
Match: tr|A0A0A0L9P3|A0A0A0L9P3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180350 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT 60
          MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT
Sbjct: 1  MASNELNEETKLEKKPEISYKRGKEEDSEGNLGYVVVGSGNCNQVVTGCIDEPVILSPTT 60

Query: 61 PGQSLNTCLCSDRET 76
          PGQSLNTCLCSDRET
Sbjct: 61 PGQSLNTCLCSDRET 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57347.12.5e-34100.00hypothetical protein Csa_3G180350 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L9P3|A0A0A0L9P3_CUCSA1.7e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180350 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016840.1CsaV3_3G016840.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..29

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016840Cucumber (Chinese Long) v3cuccucB122
CsaV3_3G016840Cucumber (Chinese Long) v3cuccucB125
CsaV3_3G016840Cucumber (Chinese Long) v3cuccucB152
CsaV3_3G016840Silver-seed gourdcarcucB0007
CsaV3_3G016840Silver-seed gourdcarcucB0748
CsaV3_3G016840Silver-seed gourdcarcucB0909
CsaV3_3G016840Silver-seed gourdcarcucB0956
CsaV3_3G016840Silver-seed gourdcarcucB0978
CsaV3_3G016840Cucumber (Gy14) v2cgybcucB117
CsaV3_3G016840Cucumber (Gy14) v2cgybcucB212
CsaV3_3G016840Cucumber (Gy14) v2cgybcucB216
CsaV3_3G016840Cucumber (Gy14) v2cgybcucB281
CsaV3_3G016840Cucumber (Gy14) v1cgycucB387
CsaV3_3G016840Cucumber (Gy14) v1cgycucB466
CsaV3_3G016840Cucumber (Gy14) v1cgycucB552
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB0332
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB0487
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB0711
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB0719
CsaV3_3G016840Cucurbita maxima (Rimu)cmacucB1060
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0282
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0327
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0476
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0697
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB0706
CsaV3_3G016840Cucurbita moschata (Rifu)cmocucB1041
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0039
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0200
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0384
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0896
CsaV3_3G016840Cucurbita pepo (Zucchini)cpecucB0903
CsaV3_3G016840Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016840Wild cucumber (PI 183967)cpicucB265
CsaV3_3G016840Wild cucumber (PI 183967)cpicucB268
CsaV3_3G016840Bottle gourd (USVL1VR-Ls)cuclsiB171
CsaV3_3G016840Bottle gourd (USVL1VR-Ls)cuclsiB227
CsaV3_3G016840Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016840Melon (DHL92) v3.5.1cucmeB165
CsaV3_3G016840Melon (DHL92) v3.5.1cucmeB178
CsaV3_3G016840Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016840Melon (DHL92) v3.6.1cucmedB154
CsaV3_3G016840Melon (DHL92) v3.6.1cucmedB169
CsaV3_3G016840Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016840Watermelon (Charleston Gray)cucwcgB212
CsaV3_3G016840Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016840Watermelon (Charleston Gray)cucwcgB257
CsaV3_3G016840Watermelon (97103) v1cucwmB239
CsaV3_3G016840Watermelon (97103) v1cucwmB271
CsaV3_3G016840Watermelon (97103) v1cucwmB291
CsaV3_3G016840Watermelon (97103) v2cucwmbB179
CsaV3_3G016840Watermelon (97103) v2cucwmbB206
CsaV3_3G016840Watermelon (97103) v2cucwmbB227
CsaV3_3G016840Watermelon (97103) v2cucwmbB237
CsaV3_3G016840Wax gourdcucwgoB256
CsaV3_3G016840Wax gourdcucwgoB290