CsaV3_3G016540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016540
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 12341494 .. 12341860 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGGTACTCATGACGATCCTCTTTCCCTAATTCCTTTTCCCTTTCCAGTCAATTTCTCGTATCGCGAGAATTTTCCCCCGTGGACACGTGTCAAAAGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

mRNA sequence

ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

Coding sequence (CDS)

ATGGTGTGCGGAATTTCGCTCAGAAGAAAACGTGTCGCGGTTTTCCTCTGTGGGGGAACTTTCCGAGCCTTGGTTCTTCGTGGAGCAGCAAGAAAAAAAGAGAAACTCTCGGGCAACTCTAATTCTACGGGCAGCTACACAGGCTGCCCCACCCGTCTACATCCGACCTCTATTTCATGTTGTGAAGACACGTGTGCTCGAAAAGTGGAGGCCCATCTTGCCAGGACGATACTAGTAGATCAATCAGAAACTTCCACGCCAGGCTTGTCATGA

Protein sequence

MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISCCEDTCARKVEAHLARTILVDQSETSTPGLS
Homology
[Close]
BLAST of CsaV3_3G016540 vs. NCBI nr
Match: KGN57313.1 (hypothetical protein Csa_3G178540 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 8.0e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60
          MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC
Sbjct: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60

Query: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 91
          CEDTCARKVEAHLARTILVDQSETSTPGLS
Sbjct: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 90

[Close]
BLAST of CsaV3_3G016540 vs. TrEMBL
Match: tr|A0A0A0L6B1|A0A0A0L6B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178540 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.3e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60
          MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC
Sbjct: 1  MVCGISLRRKRVAVFLCGGTFRALVLRGAARKKEKLSGNSNSTGSYTGCPTRLHPTSISC 60

Query: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 91
          CEDTCARKVEAHLARTILVDQSETSTPGLS
Sbjct: 61 CEDTCARKVEAHLARTILVDQSETSTPGLS 90

The following BLAST results are available for this feature:
BLAST of CsaV3_3G016540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57313.18.0e-43100.00hypothetical protein Csa_3G178540 [Cucumis sativus][more]
BLAST of CsaV3_3G016540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016540 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6B1|A0A0A0L6B1_CUCSA5.3e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016540.1CsaV3_3G016540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016540Cucumber (Chinese Long) v3cuccucB122
CsaV3_3G016540Cucumber (Chinese Long) v3cuccucB125
CsaV3_3G016540Cucumber (Chinese Long) v3cuccucB152
CsaV3_3G016540Silver-seed gourdcarcucB0116
CsaV3_3G016540Silver-seed gourdcarcucB0748
CsaV3_3G016540Silver-seed gourdcarcucB0909
CsaV3_3G016540Silver-seed gourdcarcucB0956
CsaV3_3G016540Silver-seed gourdcarcucB0978
CsaV3_3G016540Cucumber (Gy14) v2cgybcucB117
CsaV3_3G016540Cucumber (Gy14) v2cgybcucB212
CsaV3_3G016540Cucumber (Gy14) v2cgybcucB216
CsaV3_3G016540Cucumber (Gy14) v2cgybcucB281
CsaV3_3G016540Cucumber (Gy14) v1cgycucB387
CsaV3_3G016540Cucumber (Gy14) v1cgycucB466
CsaV3_3G016540Cucumber (Gy14) v1cgycucB552
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB0332
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB0487
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB0711
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB0719
CsaV3_3G016540Cucurbita maxima (Rimu)cmacucB1060
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB0327
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB0476
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB0697
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB0706
CsaV3_3G016540Cucurbita moschata (Rifu)cmocucB1041
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0039
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0200
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0384
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0896
CsaV3_3G016540Cucurbita pepo (Zucchini)cpecucB0903
CsaV3_3G016540Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016540Wild cucumber (PI 183967)cpicucB265
CsaV3_3G016540Wild cucumber (PI 183967)cpicucB268
CsaV3_3G016540Bottle gourd (USVL1VR-Ls)cuclsiB171
CsaV3_3G016540Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016540Melon (DHL92) v3.5.1cucmeB165
CsaV3_3G016540Melon (DHL92) v3.5.1cucmeB178
CsaV3_3G016540Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016540Melon (DHL92) v3.6.1cucmedB154
CsaV3_3G016540Melon (DHL92) v3.6.1cucmedB169
CsaV3_3G016540Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016540Watermelon (Charleston Gray)cucwcgB212
CsaV3_3G016540Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016540Watermelon (Charleston Gray)cucwcgB257
CsaV3_3G016540Watermelon (97103) v1cucwmB239
CsaV3_3G016540Watermelon (97103) v1cucwmB271
CsaV3_3G016540Watermelon (97103) v1cucwmB291
CsaV3_3G016540Watermelon (97103) v2cucwmbB179
CsaV3_3G016540Watermelon (97103) v2cucwmbB206
CsaV3_3G016540Watermelon (97103) v2cucwmbB237
CsaV3_3G016540Wax gourdcucwgoB290