CsaV3_3G015920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G015920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 11830610 .. 11830837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

mRNA sequence

ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

Coding sequence (CDS)

ATGGGCTCACTCCTAGCCTTAGCCCACAATTTTGAAAGGAGCTACCGCAGCCCGAATTCCCGTCGGAGACCATTAGCTCAGTCATCGAAACCATGTCCGTTCGCCATTGCCACCTCCAACTTCCGGCTTAATCTTCATTCCCATTTCTTCTTCCTCTTCTCCATCGAGCACGCAACAATCTCCAATTCAATTTATGCTGGTTTCTCAGGCCCTATTTTCTCTGAGTAA

Protein sequence

MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATISNSIYAGFSGPIFSE
Homology
[Close]
BLAST of CsaV3_3G015920 vs. NCBI nr
Match: KGN57245.1 (hypothetical protein Csa_3G173000 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60
          MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI
Sbjct: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60

Query: 61 SNSIYAGFSGPIFSE 76
          SNSIYAGFSGPIFSE
Sbjct: 61 SNSIYAGFSGPIFSE 75

[Close]
BLAST of CsaV3_3G015920 vs. TrEMBL
Match: tr|A0A0A0L5J7|A0A0A0L5J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G173000 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60
          MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI
Sbjct: 1  MGSLLALAHNFERSYRSPNSRRRPLAQSSKPCPFAIATSNFRLNLHSHFFFLFSIEHATI 60

Query: 61 SNSIYAGFSGPIFSE 76
          SNSIYAGFSGPIFSE
Sbjct: 61 SNSIYAGFSGPIFSE 75

The following BLAST results are available for this feature:
BLAST of CsaV3_3G015920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57245.15.7e-34100.00hypothetical protein Csa_3G173000 [Cucumis sativus][more]
BLAST of CsaV3_3G015920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5J7|A0A0A0L5J7_CUCSA3.7e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G173000 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G015920.1CsaV3_3G015920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G015920Lsi05G013470Bottle gourd (USVL1VR-Ls)cuclsiB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G015920Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G015920Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G015920Watermelon (97103) v1cucwmB239
CsaV3_3G015920Watermelon (97103) v2cucwmbB206
CsaV3_3G015920Wax gourdcucwgoB272
CsaV3_3G015920Silver-seed gourdcarcucB0731
CsaV3_3G015920Silver-seed gourdcarcucB1087
CsaV3_3G015920Cucumber (Gy14) v2cgybcucB117
CsaV3_3G015920Cucumber (Gy14) v1cgycucB387
CsaV3_3G015920Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G015920Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G015920Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G015920Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G015920Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G015920Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G015920Wild cucumber (PI 183967)cpicucB144
CsaV3_3G015920Bottle gourd (USVL1VR-Ls)cuclsiB245
CsaV3_3G015920Melon (DHL92) v3.5.1cucmeB236