CsaV3_3G015660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G015660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 11649191 .. 11649500 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGGTTGGGGCTGAAACTGAAGAGATATATGCTTTCGTTTATGGTTTGCGTTTGGCAATTAGGGAGATGGGCTTCGTGGGGTTTCCTTTGGAATATTGTGATGCACTTGGCTTGGTATCTCTTTCTTTCTTTCTCTTCCTCCCCATTTTCTGCTTTCTTTGTCCAAACATCCCATTTCTGTTTGTGATCAGTCTTCAAATGAAGACGTGGGTTATGCACACATTTCGGTTAGTGGTATACAAAACATAAAAGGAAGTGGGCATTAA

mRNA sequence

GGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGGTTGGGGCTGAAACTGAAGAGATATATGCTTTCGTTTATGGTTTGCGTTTGGCAATTAGGGAGATGGGCTTCGTGGGGTTTCCTTTGGAATATTGTGATGCACTTGGCTTGTCTTCAAATGAAGACGTGGGTTATGCACACATTTCGGTTAGTGGTATACAAAACATAAAAGGAAGTGGGCATTA

Coding sequence (CDS)

GGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGAGATGGGGTTGGGGCTGAAACTGAAGAGATATATGCTTTCGTTTATGGTTTGCGTTTGGCAATTAGGGAGATGGGCTTCGTGGGGTTTCCTTTGGAATATTGTGATGCACTTGGCTTGTCTTCAAATGAAGACGTGGGTTATGCACACATTTCGGTTAGTGGTATACAAAACATAAAAGGAAGTGGGCATTA

Protein sequence

GRWEMGDGRWEMGDGVGAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGYAHISVSGIQNIKGSGHX
Homology
[Close]
BLAST of CsaV3_3G015660 vs. NCBI nr
Match: KGN57218.1 (hypothetical protein Csa_3G171750 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  GRWEMGDXXXXXXXXXGAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY 60
          GRWEMGD         GAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY
Sbjct: 10 GRWEMGD-------GVGAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY 69

Query: 61 AHISVSGIQNIKGSGH 77
          AHISVSGIQNIKGSGH
Sbjct: 70 AHISVSGIQNIKGSGH 78

[Close]
BLAST of CsaV3_3G015660 vs. TrEMBL
Match: tr|A0A0A0L612|A0A0A0L612_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171750 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-28
Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  GRWEMGDXXXXXXXXXGAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY 60
          GRWEMGD         GAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY
Sbjct: 10 GRWEMGD-------GVGAETEEIYAFVYGLRLAIREMGFVGFPLEYCDALGLSSNEDVGY 69

Query: 61 AHISVSGIQNIKGSGH 77
          AHISVSGIQNIKGSGH
Sbjct: 70 AHISVSGIQNIKGSGH 78

The following BLAST results are available for this feature:
BLAST of CsaV3_3G015660 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57218.12.1e-2888.16hypothetical protein Csa_3G171750 [Cucumis sativus][more]
BLAST of CsaV3_3G015660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G015660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L612|A0A0A0L612_CUCSA1.4e-2888.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G015660.1CsaV3_3G015660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G015660Silver-seed gourdcarcucB0309
CsaV3_3G015660Silver-seed gourdcarcucB0731
CsaV3_3G015660Cucumber (Gy14) v2cgybcucB117
CsaV3_3G015660Cucumber (Gy14) v1cgycucB387
CsaV3_3G015660Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G015660Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G015660Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G015660Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G015660Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G015660Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G015660Wild cucumber (PI 183967)cpicucB144
CsaV3_3G015660Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G015660Bottle gourd (USVL1VR-Ls)cuclsiB245
CsaV3_3G015660Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G015660Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G015660Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G015660Watermelon (97103) v1cucwmB239
CsaV3_3G015660Watermelon (97103) v2cucwmbB206
CsaV3_3G015660Wax gourdcucwgoB272