CsaV3_3G015420 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G015420
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Tetratricopeptide repeat (TPR)-containing protein
Location	chr3 : 11476432 .. 11477566 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCACCTTGCTGCTCTCGTCTACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGCAAGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGGCCCTAAAGGTAGATCCAAAAGCAGCAGTTGCCTGGGAAAATCTTGCTAATGCATATTTCGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACAGGAACCAAATTGCATGTCTAAGAATGCAGAAAGGTCTCAAGATCATAGTTAGCAGCTCTCCTGGGCTGGAAATGAAGTGGCCTCAATCATTAGAGATGGAGATGGCTTGACAATTGATCATTCTGTAGCATGGGCTGGGTTTTCCATGGTTCACAAGATTCAACATGAAATTGCTGCAGGATTTCGTACAGATCTAAGTGAACTGAGAGAAAAGGAAGACCACGCCGTCTACAGTTTAAATCAGTTTTTCCCCCTTTCTTTTTCTTCTTTATTGCTCTCTTTGTATAAATATCTTGTACTTAGAGTTCTTATTAATAAAGAAGTTTTTGTCTCCGTTTCAAAAAAAAAATCAGGCAGTAGCTGAGGACACAGATGATGCTGTTCAGTGGCATCAATTCGGTCTCCATAGCCTCTGTACACGGGAATTTAAAACATCACAAAGATACCTCAAAGCCGCAATTGCCCGCTTTAAGAAGTGTAGCTTTGCATGGTCAAACCTAGGTATCTCATTACAACTCCCAAAAAACCCGACAGAGGCAGAAGAAGTATACAGGAAAGCTTTGTCATTGGTAGCCACAGAACAAGCACATACCGTATTTTGTAACCTTGGAAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGACAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCC

mRNA sequence

ATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCACCTTGCTGCTCTCGTCTACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGCAAGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGGCCCTAAAGGTAGATCCAAAAGCAGCAGTTGCCTGGGAAAATCTTGCTAATGCATATTTCGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACAGGAACCAAATTGCATGTCTAAGAATGCAGAAAGATACCTCAAAGCCGCAATTGCCCGCTTTAAGAAGTGTAGCTTTGCATGGTCAAACCTAGGTATCTCATTACAACTCCCAAAAAACCCGACAGAGGCAGAAGAAGTATACAGGAAAGCTTTGTCATTGGTAGCCACAGAACAAGCACATACCGTATTTTGTAACCTTGGAAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGACAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCC

Coding sequence (CDS)

ATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCACCTTGCTGCTCTCGTCTACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGCAAGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGGCCCTAAAGGTAGATCCAAAAGCAGCAGTTGCCTGGGAAAATCTTGCTAATGCATATTTCGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACAGGAACCAAATTGCATGTCTAAGAATGCAGAAAGATACCTCAAAGCCGCAATTGCCCGCTTTAAGAAGTGTAGCTTTGCATGGTCAAACCTAGGTATCTCATTACAACTCCCAAAAAACCCGACAGAGGCAGAAGAAGTATACAGGAAAGCTTTGTCATTGGTAGCCACAGAACAAGCACATACCGTATTTTGTAACCTTGGAAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGACAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCC

Protein sequence

MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAKECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAERYLKAAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFETALEADPLLDSANSNLLKTVA

Homology

[Close]

BLAST of CsaV3_3G015420 vs. NCBI nr
Match: KGN57192.1 (hypothetical protein Csa_3G170010 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 217/305 (71.15%), Postives = 217/305 (71.15%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK
Sbjct: 242 MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 301

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAE------- 120
           ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAE       
Sbjct: 302 ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAERSQDHTW 361

Query: 121 --------------------------------------------------------RYLK 180
                                                                   RYLK
Sbjct: 362 AGFSMVHKIQHEIAAGFRTDLSELREKEDHAVYNDAVQWHQFGLHSLCTREFKTSQRYLK 421

Query: 181 AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK 240
           AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK
Sbjct: 422 AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK 481

Query: 241 QYERAKAMFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFETALEADPLLDSANSNL 243
           QYERAKAMFSKTLGLQLGYAPA                         EADPLLDSANSNL
Sbjct: 482 QYERAKAMFSKTLGLQLGYAPAXXXXXXXXXXXXXXXXXXXXXXXXXEADPLLDSANSNL 541

[Close]

BLAST of CsaV3_3G015420 vs. NCBI nr
Match: XP_011651897.1 (PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Cucumis sativus] >KGN64364.1 hypothetical protein Csa_1G050030 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 2.2e-95
Identity = 209/352 (59.38%), Postives = 211/352 (59.94%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 281 MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAK 340

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 341 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 400

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 401 DAERSQDRSEQLSWAGNEMASVIRDGDGLTIDHSVAWAGFSMVHKIQHEIAAGFRTDLSE 460

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 240
                                                  K ++RYLKAAIARFKKCSFAW
Sbjct: 461 LREKEDHAVYSLNQAIAEDTDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKKCSFAW 520

Query: 241 SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL 243
           SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL
Sbjct: 521 SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL 580

[Close]

BLAST of CsaV3_3G015420 vs. NCBI nr
Match: XP_008439186.1 (PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 3.7e-79
Identity = 178/308 (57.79%), Postives = 184/308 (59.74%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNH AAL+ YAAFLLCK+GSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 281 MELSEKCFQELILTDQNHPAALINYAAFLLCKHGSTVVGAGANAGEGGVDEKVVGMNVAK 340

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 341 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 400

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 401 DAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSE 460

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 199
                                                  K ++RYLKAAIARFK CSFAW
Sbjct: 461 LREKEDHAVYSLNQAIAEDTDDAVQWHQLGLHSLCTREFKTSQRYLKAAIARFKNCSFAW 520

[Close]

BLAST of CsaV3_3G015420 vs. NCBI nr
Match: XP_016900166.1 (PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X2 [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 3.7e-79
Identity = 178/308 (57.79%), Postives = 184/308 (59.74%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNH AAL+ YAAFLLCK+GSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 257 MELSEKCFQELILTDQNHPAALINYAAFLLCKHGSTVVGAGANAGEGGVDEKVVGMNVAK 316

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 317 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 376

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 377 DAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSE 436

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 199
                                                  K ++RYLKAAIARFK CSFAW
Sbjct: 437 LREKEDHAVYSLNQAIAEDTDDAVQWHQLGLHSLCTREFKTSQRYLKAAIARFKNCSFAW 496

[Close]

BLAST of CsaV3_3G015420 vs. NCBI nr
Match: XP_023001243.1 (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X2 [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 172/308 (55.84%), Postives = 181/308 (58.77%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELIL DQNH AAL+ YAAFLLCKYGSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 245 MELSEKCFQELILKDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAK 304

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLA LKVDPKAA AW NLAN YFVTGDHRSSAKCLEK AK EPNCM+           
Sbjct: 305 ECLLATLKVDPKAAHAWANLANVYFVTGDHRSSAKCLEKVAKLEPNCMAMRYSVAMHRLK 364

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 365 DAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHPVAWAGLSMVHKAQHEIASGFRTDQSE 424

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 199
                                                  K ++RYLKAAIARFK CS+AW
Sbjct: 425 LREVEEHAVYSLYQGIAEDPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKNCSYAW 484

[Close]

BLAST of CsaV3_3G015420 vs. TAIR10
Match: AT5G63200.1 (tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 122/350 (34.86%), Postives = 153/350 (43.71%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELS KCFQ+L+L D NH AAL+ YAA LLCK+ STVA AGAN G    +++   MNVAK
Sbjct: 281 MELSAKCFQDLVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAK 340

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------K 120
           ECLLAAL+ DPK+A AW NLAN+Y++ GDHRSS+KCLEK AK +PNCM+          K
Sbjct: 341 ECLLAALRSDPKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIK 400

Query: 121 NAER-------------------------------------------------------- 180
           +AER                                                        
Sbjct: 401 DAERSQDASDQLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNE 460

Query: 181 ----------YLKAAIARFKKCSFAWSNLGISLQLPKNPTEAEEVY-------------- 240
                      LK A+    + +  W  LG+   L     +  + Y              
Sbjct: 461 LTEMEERAVYSLKQAVTEDPEDAVRWHQLGLH-SLCSQQYKLSQKYLXXXXXXXXXXXXX 520

[Close]

BLAST of CsaV3_3G015420 vs. TrEMBL
Match: tr|A0A0A0L976|A0A0A0L976_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G170010 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.2e-105
Identity = 217/305 (71.15%), Postives = 217/305 (71.15%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK
Sbjct: 242 MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 301

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAE------- 120
           ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAE       
Sbjct: 302 ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMSKNAERSQDHTW 361

Query: 121 --------------------------------------------------------RYLK 180
                                                                   RYLK
Sbjct: 362 AGFSMVHKIQHEIAAGFRTDLSELREKEDHAVYNDAVQWHQFGLHSLCTREFKTSQRYLK 421

Query: 181 AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK 240
           AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK
Sbjct: 422 AAIARFKKCSFAWSNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQK 481

Query: 241 QYERAKAMFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFETALEADPLLDSANSNL 243
           QYERAKAMFSKTLGLQLGYAPA                         EADPLLDSANSNL
Sbjct: 482 QYERAKAMFSKTLGLQLGYAPAXXXXXXXXXXXXXXXXXXXXXXXXXEADPLLDSANSNL 541

[Close]

BLAST of CsaV3_3G015420 vs. TrEMBL
Match: tr|A0A0A0LTP6|A0A0A0LTP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050030 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.4e-95
Identity = 209/352 (59.38%), Postives = 211/352 (59.94%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 281 MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAK 340

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 341 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 400

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 401 DAERSQDRSEQLSWAGNEMASVIRDGDGLTIDHSVAWAGFSMVHKIQHEIAAGFRTDLSE 460

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 240
                                                  K ++RYLKAAIARFKKCSFAW
Sbjct: 461 LREKEDHAVYSLNQAIAEDTDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKKCSFAW 520

Query: 241 SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL 243
           SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL
Sbjct: 521 SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL 580

[Close]

BLAST of CsaV3_3G015420 vs. TrEMBL
Match: tr|A0A1S3AYU1|A0A1S3AYU1_CUCME (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484055 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79
Identity = 178/308 (57.79%), Postives = 184/308 (59.74%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNH AAL+ YAAFLLCK+GSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 281 MELSEKCFQELILTDQNHPAALINYAAFLLCKHGSTVVGAGANAGEGGVDEKVVGMNVAK 340

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 341 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 400

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 401 DAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSE 460

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 199
                                                  K ++RYLKAAIARFK CSFAW
Sbjct: 461 LREKEDHAVYSLNQAIAEDTDDAVQWHQLGLHSLCTREFKTSQRYLKAAIARFKNCSFAW 520

[Close]

BLAST of CsaV3_3G015420 vs. TrEMBL
Match: tr|A0A1S4DW00|A0A1S4DW00_CUCME (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484055 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79
Identity = 178/308 (57.79%), Postives = 184/308 (59.74%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           MELSEKCFQELILTDQNH AAL+ YAAFLLCK+GSTV  AGANAGEGGVDEKVVGMNVAK
Sbjct: 257 MELSEKCFQELILTDQNHPAALINYAAFLLCKHGSTVVGAGANAGEGGVDEKVVGMNVAK 316

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------- 120
           ECLLAALKVDPKAA AW NLANAYFVTGDHRSSAKCLEKGAK EPNCMS           
Sbjct: 317 ECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLK 376

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 377 DAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSE 436

Query: 181 ---------------------------------------KNAERYLKAAIARFKKCSFAW 199
                                                  K ++RYLKAAIARFK CSFAW
Sbjct: 437 LREKEDHAVYSLNQAIAEDTDDAVQWHQLGLHSLCTREFKTSQRYLKAAIARFKNCSFAW 496

[Close]

BLAST of CsaV3_3G015420 vs. TrEMBL
Match: tr|A0A2G5CGF2|A0A2G5CGF2_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_05600064v1 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 164/351 (46.72%), Postives = 200/351 (56.98%), Query Frame = 0


Query: 1   MELSEKCFQELILTDQNHLAALVYYAAFLLCKYGSTVASAGANAGEGGVDEKVVGMNVAK 60
           M+L+ KCFQ+L+L DQNH AAL+ YA  LLCKYGS +A AGANA E    +++V  NVAK
Sbjct: 320 MDLATKCFQDLVLKDQNHPAALMNYAVVLLCKYGSVIAGAGANASEEASTDQLVAANVAK 379

Query: 61  ECLLAALKVDPKAAVAWENLANAYFVTGDHRSSAKCLEKGAKQEPNCMS----------K 120
           +CLLAA   DP+AA  W NLANA+ ++GDHRS+ KCLEK AK EPNCMS          K
Sbjct: 380 DCLLAAATADPRAADIWVNLANAFSMSGDHRSAGKCLEKAAKLEPNCMSTRYAVAVHRIK 439

Query: 121 NAER-------------------------------------------------------- 180
           NAER                                                        
Sbjct: 440 NAERSQDPTEQLSWAGSEMASILKEGEPAIIEPHLGWAGLAMVHRAQHEITAAYETGQKD 499

Query: 181 --------------------------------------------YLKAAIARFKKCSFAW 240
                                                       YLKAA+AR K CS+AW
Sbjct: 500 LTEVEERALHTLKQAIEEKPDDAVQWHQLGLYYLCTLQFKASQKYLKAAVARCKDCSYAW 559

Query: 241 SNLGISLQLPKNPTEAEEVYRKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKTL 242
           SNLGISLQL ++P++AEEVYR+ALSL   +QAHT+F NLGNLYRQQKQ+ RAKAMF+K+L
Sbjct: 560 SNLGISLQLSEDPSQAEEVYRRALSLATPQQAHTMFANLGNLYRQQKQFARAKAMFAKSL 619

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57192.1	1.8e-105	71.15	hypothetical protein Csa_3G170010 [Cucumis sativus]	[more]
XP_011651897.1	2.2e-95	59.38	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransfe...	[more]
XP_008439186.1	3.7e-79	57.79	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransfe...	[more]
XP_016900166.1	3.7e-79	57.79	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransfe...	[more]
XP_023001243.1	1.0e-76	55.84	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDL...	[more]

BLAST of CsaV3_3G015420 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63200.1	1.2e-42	34.86	tetratricopeptide repeat (TPR)-containing protein	[more]

BLAST of CsaV3_3G015420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G015420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L976\|A0A0A0L976_CUCSA	1.2e-105	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G170010 PE=4 SV=1	[more]
tr\|A0A0A0LTP6\|A0A0A0LTP6_CUCSA	1.4e-95	59.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050030 PE=4 SV=1	[more]
tr\|A0A1S3AYU1\|A0A1S3AYU1_CUCME	2.5e-79	57.79	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDL...	[more]
tr\|A0A1S4DW00\|A0A1S4DW00_CUCME	2.5e-79	57.79	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDL...	[more]
tr\|A0A2G5CGF2\|A0A2G5CGF2_AQUCA	1.1e-74	46.72	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_05600064v1 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf
IPR019734	TPR_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015420.1	CsaV3_3G015420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 74..107 e-value: 0.0048 score: 26.1 coord: 127..160 e-value: 1.9 score: 17.5 coord: 197..230 e-value: 3.6E-4 score: 29.9 coord: 163..196 e-value: 0.038 score: 23.1
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 127..160 score: 7.257
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 74..107 score: 7.847
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 197..230 score: 10.502
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 163..196 score: 8.349
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 2..241 e-value: 6.4E-37 score: 129.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 59..237
None	No IPR available	PFAM	PF13432	TPR_16	coord: 59..93 e-value: 0.0076 score: 16.8
None	No IPR available	PFAM	PF13424	TPR_12	coord: 164..227 e-value: 5.0E-8 score: 33.0
None	No IPR available	PANTHER	PTHR45523	FAMILY NOT NAMED	coord: 110..242 coord: 1..109
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 127..230 score: 20.848
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 59..107 score: 8.688

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G015420	CSPI03G15210	Wild cucumber (PI 183967)	cpicucB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G015420	Silver-seed gourd	carcucB0079
CsaV3_3G015420	Silver-seed gourd	carcucB0309
CsaV3_3G015420	Silver-seed gourd	carcucB0777
CsaV3_3G015420	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G015420	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G015420	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G015420	Cucurbita maxima (Rimu)	cmacucB0425
CsaV3_3G015420	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G015420	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G015420	Cucurbita moschata (Rifu)	cmocucB0420
CsaV3_3G015420	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G015420	Cucurbita pepo (Zucchini)	cpecucB0154
CsaV3_3G015420	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G015420	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G015420	Bottle gourd (USVL1VR-Ls)	cuclsiB163
CsaV3_3G015420	Bottle gourd (USVL1VR-Ls)	cuclsiB229
CsaV3_3G015420	Bottle gourd (USVL1VR-Ls)	cuclsiB245
CsaV3_3G015420	Melon (DHL92) v3.5.1	cucmeB176
CsaV3_3G015420	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G015420	Melon (DHL92) v3.6.1	cucmedB167
CsaV3_3G015420	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G015420	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G015420	Watermelon (Charleston Gray)	cucwcgB254
CsaV3_3G015420	Watermelon (97103) v1	cucwmB239
CsaV3_3G015420	Watermelon (97103) v2	cucwmbB206
CsaV3_3G015420	Wax gourd	cucwgoB257
CsaV3_3G015420	Wax gourd	cucwgoB272