CsaV3_3G014710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G014710
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 10937678 .. 10937926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGTGCTTTTGATGTTAAACCATCTTTCAAGCCCCGGAGACTGCCAAGACGCCGATCAACATTCCGATTCCGCCGCACGAAGAAACCTCTTGACAGTTGCGAACGATGCGGCCATTCTTTCACCAGAAGCACTTGCCATCTTCGGCCGATTTCTTCGCCATTGAATGTCTACGCTCTTCTTCCATCCCAATCTTCCTTCTCACCCTCAGATTGCCTTAAAAAATTTCTCTGCATTGGAGTGTGA

mRNA sequence

ATGATTAGTGCTTTTGATGTTAAACCATCTTTCAAGCCCCGGAGACTGCCAAGACGCCGATCAACATTCCGATTCCGCCGCACGAAGAAACCTCTTGACAGTTGCGAACGATGCGGCCATTCTTTCACCAGAAGCACTTGCCATCTTCGGCCGATTTCTTCGCCATTGAATGTCTACGCTCTTCTTCCATCCCAATCTTCCTTCTCACCCTCAGATTGCCTTAAAAAATTTCTCTGCATTGGAGTGTGA

Coding sequence (CDS)

ATGATTAGTGCTTTTGATGTTAAACCATCTTTCAAGCCCCGGAGACTGCCAAGACGCCGATCAACATTCCGATTCCGCCGCACGAAGAAACCTCTTGACAGTTGCGAACGATGCGGCCATTCTTTCACCAGAAGCACTTGCCATCTTCGGCCGATTTCTTCGCCATTGAATGTCTACGCTCTTCTTCCATCCCAATCTTCCTTCTCACCCTCAGATTGCCTTAAAAAATTTCTCTGCATTGGAGTGTGA

Protein sequence

MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYALLPSQSSFSPSDCLKKFLCIGV
Homology
[Close]
BLAST of CsaV3_3G014710 vs. NCBI nr
Match: KGN57115.1 (hypothetical protein Csa_3G154375 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.9e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA 60
          MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA
Sbjct: 1  MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA 60

Query: 61 LLPSQSSFSPSDCLKKFLCIGV 83
          LLPSQSSFSPSDCLKKFLCIGV
Sbjct: 61 LLPSQSSFSPSDCLKKFLCIGV 82

[Close]
BLAST of CsaV3_3G014710 vs. NCBI nr
Match: XP_008438888.1 (PREDICTED: uncharacterized protein LOC103483847 isoform X1 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 22 TFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNV 59
          TFRFRRTKKPLDSCERCG S TRS+ HLRPIS PLNV
Sbjct: 5  TFRFRRTKKPLDSCERCGRSSTRSSSHLRPISPPLNV 41

[Close]
BLAST of CsaV3_3G014710 vs. TrEMBL
Match: tr|A0A0A0L591|A0A0A0L591_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154375 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA 60
          MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA
Sbjct: 1  MISAFDVKPSFKPRRLPRRRSTFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNVYA 60

Query: 61 LLPSQSSFSPSDCLKKFLCIGV 83
          LLPSQSSFSPSDCLKKFLCIGV
Sbjct: 61 LLPSQSSFSPSDCLKKFLCIGV 82

[Close]
BLAST of CsaV3_3G014710 vs. TrEMBL
Match: tr|A0A1S3AXJ3|A0A1S3AXJ3_CUCME (uncharacterized protein LOC103483847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483847 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 22 TFRFRRTKKPLDSCERCGHSFTRSTCHLRPISSPLNV 59
          TFRFRRTKKPLDSCERCG S TRS+ HLRPIS PLNV
Sbjct: 5  TFRFRRTKKPLDSCERCGRSSTRSSSHLRPISPPLNV 41

The following BLAST results are available for this feature:
BLAST of CsaV3_3G014710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57115.19.9e-40100.00hypothetical protein Csa_3G154375 [Cucumis sativus][more]
XP_008438888.11.2e-0886.49PREDICTED: uncharacterized protein LOC103483847 isoform X1 [Cucumis melo][more]
BLAST of CsaV3_3G014710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L591|A0A0A0L591_CUCSA6.5e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154375 PE=4 SV=1[more]
tr|A0A1S3AXJ3|A0A1S3AXJ3_CUCME7.8e-0986.49uncharacterized protein LOC103483847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G014710.1CsaV3_3G014710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G014710Cucumber (Chinese Long) v3cuccucB026
CsaV3_3G014710Silver-seed gourdcarcucB0079
CsaV3_3G014710Silver-seed gourdcarcucB0640
CsaV3_3G014710Silver-seed gourdcarcucB0741
CsaV3_3G014710Silver-seed gourdcarcucB0878
CsaV3_3G014710Cucumber (Gy14) v2cgybcucB030
CsaV3_3G014710Cucumber (Gy14) v2cgybcucB117
CsaV3_3G014710Cucumber (Gy14) v1cgycucB387
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB0008
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB0433
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G014710Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G014710Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G014710Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G014710Cucurbita moschata (Rifu)cmocucB0428
CsaV3_3G014710Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G014710Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G014710Cucurbita pepo (Zucchini)cpecucB0154
CsaV3_3G014710Cucurbita pepo (Zucchini)cpecucB0379
CsaV3_3G014710Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G014710Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G014710Wild cucumber (PI 183967)cpicucB033
CsaV3_3G014710Wild cucumber (PI 183967)cpicucB144
CsaV3_3G014710Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G014710Bottle gourd (USVL1VR-Ls)cuclsiB218
CsaV3_3G014710Melon (DHL92) v3.5.1cucmeB176
CsaV3_3G014710Melon (DHL92) v3.5.1cucmeB198
CsaV3_3G014710Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G014710Melon (DHL92) v3.6.1cucmedB167
CsaV3_3G014710Melon (DHL92) v3.6.1cucmedB189
CsaV3_3G014710Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G014710Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G014710Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G014710Watermelon (97103) v1cucwmB239
CsaV3_3G014710Watermelon (97103) v1cucwmB288
CsaV3_3G014710Watermelon (97103) v2cucwmbB206
CsaV3_3G014710Watermelon (97103) v2cucwmbB233
CsaV3_3G014710Wax gourdcucwgoB262
CsaV3_3G014710Wax gourdcucwgoB272