CsaV3_3G014250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G014250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 10666399 .. 10666789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAAGCAAAGAGCAACCGAAATTCGAGCGTCAAATTGCAGCAATTGAATTCAACTCACAAAATCAGAACCACGTTCCAGAATAAGGAAAATTAATTGAAATAAAGAAGAATTATCAAGAGGAAATGAATTACAAAATTGAACAAACTTGGAAAAGGAGAAAAACAGGCCGAAGATTATGCGGTTCGGCCGATGATCGCAACGTTAAAGCACCGGCGTCGGCACCGGCTTCAATCAAGGAAAAAGGAATGCCGCGTCATGCGTGCCGAAGGAGCTAGACGAGTGCAATCAGTTCTTGCCGGAGAAGGAAAGGGAAATCTTCTGCAAACAAACGGAGGAAGCTTAGCAAAACGGAGAACGACGGAAAACGACTTAAGAAGCCGATGA

mRNA sequence

ATGACACCAAGCAAAGAGCAACCGAAATTCGAGCGTCAAATTGCAGCAATTGAATTCAACTCACAAAATCAGAACCACGCCGAAGATTATGCGGTTCGGCCGATGATCGCAACGTTAAAGCACCGGCGTCGGCACCGGCTTCAATCAAGGAAAAAGGAATGCCGCGTCATGCGTGCCGAAGGAGCTAGACGAGTGCAATCAGTTCTTGCCGGAGAAGGAAAGGGAAATCTTCTGCAAACAAACGGAGGAAGCTTAGCAAAACGGAGAACGACGGAAAACGACTTAAGAAGCCGATGA

Coding sequence (CDS)

ATGACACCAAGCAAAGAGCAACCGAAATTCGAGCGTCAAATTGCAGCAATTGAATTCAACTCACAAAATCAGAACCACGCCGAAGATTATGCGGTTCGGCCGATGATCGCAACGTTAAAGCACCGGCGTCGGCACCGGCTTCAATCAAGGAAAAAGGAATGCCGCGTCATGCGTGCCGAAGGAGCTAGACGAGTGCAATCAGTTCTTGCCGGAGAAGGAAAGGGAAATCTTCTGCAAACAAACGGAGGAAGCTTAGCAAAACGGAGAACGACGGAAAACGACTTAAGAAGCCGATGA

Protein sequence

MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAEGARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR
Homology
[Close]
BLAST of CsaV3_3G014250 vs. NCBI nr
Match: KGN57079.1 (hypothetical protein Csa_3G152060 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE 60
          MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE
Sbjct: 1  MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE 60

Query: 61 GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR 99
          GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR
Sbjct: 61 GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR 98

[Close]
BLAST of CsaV3_3G014250 vs. TrEMBL
Match: tr|A0A0A0L7U6|A0A0A0L7U6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152060 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.0e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE 60
          MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE
Sbjct: 1  MTPSKEQPKFERQIAAIEFNSQNQNHAEDYAVRPMIATLKHRRRHRLQSRKKECRVMRAE 60

Query: 61 GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR 99
          GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR
Sbjct: 61 GARRVQSVLAGEGKGNLLQTNGGSLAKRRTTENDLRSR 98

The following BLAST results are available for this feature:
BLAST of CsaV3_3G014250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57079.11.2e-44100.00hypothetical protein Csa_3G152060 [Cucumis sativus][more]
BLAST of CsaV3_3G014250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G014250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7U6|A0A0A0L7U6_CUCSA8.0e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G014250.1CsaV3_3G014250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G014250CSPI03G14030Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G014250Cucumber (Chinese Long) v3cuccucB141
CsaV3_3G014250Cucumber (Chinese Long) v3cuccucB150
CsaV3_3G014250Silver-seed gourdcarcucB0355
CsaV3_3G014250Silver-seed gourdcarcucB0640
CsaV3_3G014250Silver-seed gourdcarcucB0878
CsaV3_3G014250Cucumber (Gy14) v2cgybcucB117
CsaV3_3G014250Cucumber (Gy14) v2cgybcucB279
CsaV3_3G014250Cucumber (Gy14) v1cgycucB274
CsaV3_3G014250Cucumber (Gy14) v1cgycucB387
CsaV3_3G014250Cucumber (Gy14) v1cgycucB554
CsaV3_3G014250Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G014250Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G014250Cucurbita maxima (Rimu)cmacucB0433
CsaV3_3G014250Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G014250Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G014250Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G014250Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G014250Cucurbita moschata (Rifu)cmocucB0428
CsaV3_3G014250Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G014250Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G014250Cucurbita pepo (Zucchini)cpecucB0154
CsaV3_3G014250Cucurbita pepo (Zucchini)cpecucB0379
CsaV3_3G014250Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G014250Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G014250Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G014250Wild cucumber (PI 183967)cpicucB345
CsaV3_3G014250Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G014250Bottle gourd (USVL1VR-Ls)cuclsiB218
CsaV3_3G014250Melon (DHL92) v3.5.1cucmeB176
CsaV3_3G014250Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G014250Melon (DHL92) v3.6.1cucmedB167
CsaV3_3G014250Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G014250Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G014250Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G014250Watermelon (97103) v1cucwmB239
CsaV3_3G014250Watermelon (97103) v1cucwmB288
CsaV3_3G014250Watermelon (97103) v2cucwmbB206
CsaV3_3G014250Watermelon (97103) v2cucwmbB233
CsaV3_3G014250Wax gourdcucwgoB262
CsaV3_3G014250Wax gourdcucwgoB272