CsaV3_3G013330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G013330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 10084392 .. 10084709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

mRNA sequence

ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

Coding sequence (CDS)

ATGAATTTAGACAATGTGGGCTGCCAATATGGCGTCCGAGATAGATCTCAGTCTAGAAATGATTTTGAGACCTGTCACATAAACTTGCGCAGTCGTGGTGTTTGGCCACCTACACTTCGGAGCTCATTTTGTCAGTGTAGCTCATTTTGTCATACTTATCAGTTCAATTGTCTCCTTTGCTTGATTCGTTCGGCTATTCGGAGGCTTGGTTTAAGTCAGAGAACGAACAGCGTGCTCCAATGGGTTTCAAGACATGCGTCTTCCGGTGGTTTAGGTCATGTGGCAAGCTATATGAGTATGGCGATGCCAATAACATAA

Protein sequence

MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLCLIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT
Homology
[Close]
BLAST of CsaV3_3G013330 vs. NCBI nr
Match: KGN56986.1 (hypothetical protein Csa_3G146710 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60
           MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC
Sbjct: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60

Query: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 106
           LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT
Sbjct: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 105

[Close]
BLAST of CsaV3_3G013330 vs. TrEMBL
Match: tr|A0A0A0LAA4|A0A0A0LAA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146710 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60
           MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC
Sbjct: 1   MNLDNVGCQYGVRDRSQSRNDFETCHINLRSRGVWPPTLRSSFCQCSSFCHTYQFNCLLC 60

Query: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 106
           LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT
Sbjct: 61  LIRSAIRRLGLSQRTNSVLQWVSRHASSGGLGHVASYMSMAMPIT 105

The following BLAST results are available for this feature:
BLAST of CsaV3_3G013330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56986.12.1e-55100.00hypothetical protein Csa_3G146710 [Cucumis sativus][more]
BLAST of CsaV3_3G013330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G013330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G013330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAA4|A0A0A0LAA4_CUCSA1.4e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G013330.1CsaV3_3G013330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G013330CSPI03G13160Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G013330Silver-seed gourdcarcucB0078
CsaV3_3G013330Silver-seed gourdcarcucB0355
CsaV3_3G013330Silver-seed gourdcarcucB0640
CsaV3_3G013330Silver-seed gourdcarcucB0889
CsaV3_3G013330Cucumber (Gy14) v2cgybcucB117
CsaV3_3G013330Cucumber (Gy14) v1cgycucB387
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB0431
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB1051
CsaV3_3G013330Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB0426
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G013330Cucurbita moschata (Rifu)cmocucB1035
CsaV3_3G013330Cucurbita pepo (Zucchini)cpecucB0159
CsaV3_3G013330Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G013330Cucurbita pepo (Zucchini)cpecucB0388
CsaV3_3G013330Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G013330Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G013330Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G013330Bottle gourd (USVL1VR-Ls)cuclsiB189
CsaV3_3G013330Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G013330Melon (DHL92) v3.5.1cucmeB187
CsaV3_3G013330Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G013330Melon (DHL92) v3.6.1cucmedB179
CsaV3_3G013330Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G013330Watermelon (Charleston Gray)cucwcgB189
CsaV3_3G013330Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G013330Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G013330Watermelon (97103) v1cucwmB200
CsaV3_3G013330Watermelon (97103) v1cucwmB239
CsaV3_3G013330Watermelon (97103) v1cucwmB288
CsaV3_3G013330Watermelon (97103) v2cucwmbB206
CsaV3_3G013330Watermelon (97103) v2cucwmbB233
CsaV3_3G013330Watermelon (97103) v2cucwmbB261
CsaV3_3G013330Wax gourdcucwgoB255
CsaV3_3G013330Wax gourdcucwgoB272