CsaV3_3G013310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G013310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 10082305 .. 10082764 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATATCTGAGGCTTGGATGAGTCGTTTGCAATGGTCTCCAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTACCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCGAACAAATTGAGGGGCTAGTAAAAGCAAACCATCTTCCCAAGAACATGAAGCCACATAAAATCTAAGAAGTATTTATATGCCTAGGTTAAGAAAAACAACACAACCTGTAACGAATGGATCAACTCATTGAAGCATAGCATCAAACAGATGGTCTGCATTAAACGAATGAATCGAAAGGCATTGCAAAACCTATTTTCAGTCGGAGCCGCAAGCTGCAAGCAAAACATGAACATGTTTCCCAAAAATAGGAAAGAAAATAAACCATACTTGATTGATGCTGTAATGTCCTAGGATTCAGAATCTGGATTTGGTCTCCTACCCTTTCGAGGGTACTCAACCTAA

mRNA sequence

ATGGGGATATCTGAGGCTTGGATGAGTCGTTTGCAATGGTCTCCAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTACCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCGAACAAATTGAGGGGCTAGATTCAGAATCTGGATTTGGTCTCCTACCCTTTCGAGGGTACTCAACCTAA

Coding sequence (CDS)

ATGGGGATATCTGAGGCTTGGATGAGTCGTTTGCAATGGTCTCCAATGACCTATCCTTTCATTCTCACTTCCAAGGCTTACCTTAGGCAATGCTTTTGTGCAAAAGCTGCAGGACTCGAACAAATTGAGGGGCTAGATTCAGAATCTGGATTTGGTCTCCTACCCTTTCGAGGGTACTCAACCTAA

Protein sequence

MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYST
Homology
[Close]
BLAST of CsaV3_3G013310 vs. NCBI nr
Match: KGN56984.1 (hypothetical protein Csa_3G146690 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 6.5e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS 60
          MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS
Sbjct: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]
BLAST of CsaV3_3G013310 vs. TrEMBL
Match: tr|A0A0A0L7J7|A0A0A0L7J7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146690 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS 60
          MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS
Sbjct: 1  MGISEAWMSRLQWSPMTYPFILTSKAYLRQCFCAKAAGLEQIEGLDSESGFGLLPFRGYS 60

Query: 61 T 62
          T
Sbjct: 61 T 61

The following BLAST results are available for this feature:
BLAST of CsaV3_3G013310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56984.16.5e-28100.00hypothetical protein Csa_3G146690 [Cucumis sativus][more]
BLAST of CsaV3_3G013310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G013310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G013310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7J7|A0A0A0L7J7_CUCSA4.3e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146690 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G013310.1CsaV3_3G013310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G013310CSPI03G13140Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G013310Silver-seed gourdcarcucB0078
CsaV3_3G013310Silver-seed gourdcarcucB0355
CsaV3_3G013310Silver-seed gourdcarcucB0640
CsaV3_3G013310Silver-seed gourdcarcucB0889
CsaV3_3G013310Cucumber (Gy14) v2cgybcucB117
CsaV3_3G013310Cucumber (Gy14) v1cgycucB387
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB0431
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB1051
CsaV3_3G013310Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB0426
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G013310Cucurbita moschata (Rifu)cmocucB1035
CsaV3_3G013310Cucurbita pepo (Zucchini)cpecucB0159
CsaV3_3G013310Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G013310Cucurbita pepo (Zucchini)cpecucB0388
CsaV3_3G013310Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G013310Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G013310Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G013310Bottle gourd (USVL1VR-Ls)cuclsiB189
CsaV3_3G013310Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G013310Melon (DHL92) v3.5.1cucmeB187
CsaV3_3G013310Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G013310Melon (DHL92) v3.6.1cucmedB179
CsaV3_3G013310Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G013310Watermelon (Charleston Gray)cucwcgB189
CsaV3_3G013310Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G013310Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G013310Watermelon (97103) v1cucwmB200
CsaV3_3G013310Watermelon (97103) v1cucwmB239
CsaV3_3G013310Watermelon (97103) v1cucwmB288
CsaV3_3G013310Watermelon (97103) v2cucwmbB206
CsaV3_3G013310Watermelon (97103) v2cucwmbB233
CsaV3_3G013310Watermelon (97103) v2cucwmbB261
CsaV3_3G013310Wax gourdcucwgoB255
CsaV3_3G013310Wax gourdcucwgoB272