CsaV3_3G012110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G012110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 9352571 .. 9356299 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTTCTAAGGTGATGTTGTAAACTTGACTTAAAATACTTGCTCTATTCATAACATGACCAACCAGGTCTTCTCTTCAGGTTGTTGGTTCCTTTTTATTCATTCAATTGGTCTCTAAATATCCTAAAGTCTCCTACTGAGTTCCTAGACATAACTGTTTGGTTTAAAATAAATTTTTTTACTGCTCCAAGCTGTGAGTTAAGTTCCTCCTTATATTCCGTTTACACAAAAAATTACTCTCTATTTTATCTTATCTAATTGAAGGAATACATGCTACGAGTTGTGATTTTTTCCAGTTGTGATAAGCAGATGTTCAAAAACTTGCTCCATCGTGTTGGGATCATGAGGGTGGATGTGACTCCATTGCTGTTGGTTTCTCAATTCTCCAACTCATAAGTAATTCTCTCTCCTCCTTATGGGTTTAGAGATAAATGTCATGTCAATATATTTTTTTAAGGATAATTAGAGTTAGCTGATGAATTAAATTGATACCAGGGAAGCCAACGGAGGGATAAGAAATTAATGATAATAAGAAAATGTTTTAGAGCAAAGGAGAACAACCACTTATCGGTTACAGGACCTTATCAAATATAGATTGTGATATGAAAACCATATGTTTTCTGATACCTCACTGTGAAGCAAGAAAAAGCAAAACTCTGTCAAATGGGGCCCTGTAAACAATAGAAAGAAAGACCCAAAAATACAAACAAACAAACAAATGGCTTCCAATTAGCCATAGATATCAGCTTGGAGTTGGTTAGTGACTTTGTCATGTACCTCACTCGCACCTCACCTTCTCCCCACTATCAAATAAGAAATTTACCTTAGAAATGAGGCTAGCCTTTTGGTTTCTCCAAAAGCCAATTCTAAAAAAGAAAAAGGCTTAAACAGCAACCTCTTGTTTGAGAGAATCATGTGGACCCTTAAGACTTTTTGTTGTGGGCTATCTATTTCAAAACGATTGAGGAGAAAATGAAGGAAAAATCTTCGGACTATGGCTGAAATGCAGTCAGGTATGTTATCAAAGTTTTAGGTATGCATGTGCAATAAATGTAAAACAAAACGTACCCGTGGGAGGTACCTTTTGTTTAATGGATTATGGCCAATTATGAAATCTTGTGCAGGTCCACACAAGAATGACAAAAATTGGGAGGAGACAAGAATGACAAAAATTGGTAGGGGAAGAAAAATAAATGAGGTGAGAGCTATAGAACCGAAAAGGATGGATTATAGAGAGAATATATATAAATATATAAACCAGTACGAAAAATAATTGAAATAGTCGTAAATATAGAGATGAGATTTAAAGTATTATCAGAAATAACAATAATTTGAAAAATTGCAAACCTAACAAAATTTATCATAATAGATAGACAATGTTTTAAATATTGAATTAGATAGACATGGAAGTATATTGTTAATAGACTTTGCTATATTTCCACCCTAAAACGGTCATCAACCACTAACTATTCAAATTAATTTATTGATTTTGTTGAAAGTTTTAACTGTTGACTGACCTTACTCTTGGTTTTCTTCGGGAAAGTCTTCGTGAGTTCGTTTAGTATATGGAGAAATACTTGGGTCAAGAAGAAGAAATTAGTTTAGCTTTCCTCAAATAATAATAATATTTTGATTATATAGTTATTCTTACTTTATTTGAAAGTTATAAAATTTAGAAAATTACTTTCATACCCCTGAAATTTTGAACAACAGAATTATTATTTTTTAAAAGATTTTAAAACCTATCTTTTTATTTTATTTTTGTGAATATTTGAGATTGTACCTTAATCTTAAGATTTTTAAAAACGTATTTAAAACATTACTAAAATGATTTTATATTATTATTTTAAATAATTATGACATTTTAAGTGAGCAAAATAATTTTAGAGAAAAACTATTGTTTTAAGAGGTTTTTTTTTAAAAAAAAAAATAATAAAATATTTATTCTCCATGTAAAAAAGGATGAAATTACGAAAATCATCAATTTTGCTACTTTTGATAATTCTATTTTTTAACATTTATTTTGAACATTTTAATGGTCAAATTACTGTTTAGAATAATAAGGAAAAATTTTATTTCACAGATCTCGTTAATTTATTTAAAAAGATTTAAAGACTAAAAGTATATACTATGACTAGAAAGACGCACTGTGAAAATTGATGAACTAAAAATGCATCTTTTCTTTTTAAAAATTGTGACCAAAAGATTATATTTTTAAAAAAATTGAGGACGAAACACACGTTATCCAAAATTGAAGACAAGTAGATAATTGTTCTTAAAATATATTTCATGTTTCTCCACTTTATTCCTTAATTAATATCCCTCCAAACTCCCAACTCTCAAGTCCCAATCATATTCTTGTTAATTAAGAAAAAGTAAAAAGCTGCTTCCAATTTTGTCAGTATTCTCAGATCAGAATCAAATATCTTGTTCCACAACTTCGAGATTATTGTTATTGTTGATATACCTATTGTTATTTTCATTGGATCATATCTTGGTTGTTATTTTGATTGGATCATATCTCAAGATATGGTCTTTGAAATGTAACCTAATTAATTTTGTGTGTGATAGATCAAAAATTAAGTCATTCAATTAAAAGTTTTTGGTAGCATATAAAAAGTTTGATAAAAAATCGACCGATCAATCAATTGTTGATTTTTACTCCTCCATGATCGATATCTGTTTAGTAAAAAAAAAATTATTTTGATTGTGTGAATGTAATAAAGAAATTTTGGATTTCTTTGTGTAGTACTTATTTTGAGAATGAGTGAAGTTTTAAACATTAAACTTTTCAGAGAGTATGCTAATAAACTCTCAAAATTTTCTTTTGGTTTCTCAATTCTTGTAAGGTTGGTTGTTGTTTGTTTCTCTTAATTTTGTGAGTTACTCCAACAAGTTATCTCATTTGTTTGGCTTTTCGTGTCCTAAACTCTAATTCCCCTTCTTTTGATTCGATACTTTTCTCCCTTGACTATTGTGTTTAGCTTAAATCCATTTTGCCTTCTTAATAATATGATTCTTTTCTTTCAAAAGAAAATGTCTACGATGGTATAACTTAATTCTGTCCTATAATATTTCATCAAAATTAGTAAAACTCAATAGATATTATTTATTTAAAAATTAGATATTCATACGAAAAAAAATCAATACAATATTAAAAACAATACAATATATAACAATCTTTAGTTCAACTTTTCGATTATTTAATTTTAAAAATAAATCAATTTTAAAAAAATTAAAATATTTAACATCACCCAAAATAACATTTGAAACACTAATCTTTCGAAAATTTTAACATCAATATTCTTTTAAAAAATATACATGTTTTTAGTCTATTCAAACACACCTTGTTTGATGGTGAATGATCCAAGAAAAGGAAAGTTTTTTGGGGAGTGATGTGGAATGAGATTCAAAAGATATTTTGCAATCAATATAAATACTTATATATATAATTTAATTAATAATATTATTTAGATAATGTAAATTGTAAATTGCAATAATATAGGTTTTCAAGAAAAAGGGAACACGTTGATGATGGAACGCGGGACTCACCGGCATGACCAACACGCGTTCCTGTTTTCCTTCATAACGCAGTTTCTCCCCTCTTCCATAAACGACAACCTTTTTAACAAGAATATGGAAACGACGTGTCGTCCGGAATCAGTGGACCATTTCTTTTTTGGAAAGTTTCATCTGCTTACAAAACTAATAAAATTTATCCCATAA

mRNA sequence

ATGATGCTTCTAAGGTTGTTGGTTCCTTTTTATTCATTCAATTGGTCTCTAAATATCCTAAAGTCTCCTACTGAGTTCCTAGACATAACTGTTTGGTTTAAAATAAATTTTTTTACTGCTCCAAGCTATGTTCAAAAACTTGCTCCATCGTGTTGGGATCATGAGGGTGGATGTGACTCCATTGCTGTTGGTTTCTCAATTCTCCAACTCATAAGTTTTCAAGAAAAAGGGAACACGTTGATGATGGAACGCGGGACTCACCGGCATGACCAACACGCGTTCCTGTTTTCCTTCATAACGCAGTTTCTCCCCTCTTCCATAAACGACAACCTTTTTAACAAGAATATGGAAACGACGTGTCGTCCGGAATCAGTGGACCATTTCTTTTTTGGAAAGTTTCATCTGCTTACAAAACTAATAAAATTTATCCCATAA

Coding sequence (CDS)

ATGATGCTTCTAAGGTTGTTGGTTCCTTTTTATTCATTCAATTGGTCTCTAAATATCCTAAAGTCTCCTACTGAGTTCCTAGACATAACTGTTTGGTTTAAAATAAATTTTTTTACTGCTCCAAGCTATGTTCAAAAACTTGCTCCATCGTGTTGGGATCATGAGGGTGGATGTGACTCCATTGCTGTTGGTTTCTCAATTCTCCAACTCATAAGTTTTCAAGAAAAAGGGAACACGTTGATGATGGAACGCGGGACTCACCGGCATGACCAACACGCGTTCCTGTTTTCCTTCATAACGCAGTTTCTCCCCTCTTCCATAAACGACAACCTTTTTAACAAGAATATGGAAACGACGTGTCGTCCGGAATCAGTGGACCATTTCTTTTTTGGAAAGTTTCATCTGCTTACAAAACTAATAAAATTTATCCCATAA

Protein sequence

MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDSIAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTCRPESVDHFFFGKFHLLTKLIKFIP
Homology
[Close]
BLAST of CsaV3_3G012110 vs. NCBI nr
Match: KGN56858.1 (hypothetical protein Csa_3G135060 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 2.2e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS 60
           MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS
Sbjct: 1   MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS 60

Query: 61  IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC 120
           IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC
Sbjct: 61  IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC 120

Query: 121 RPESVDHFFFGKFHLLTKLIKFIP 145
           RPESVDHFFFGKFHLLTKLIKFIP
Sbjct: 121 RPESVDHFFFGKFHLLTKLIKFIP 144

[Close]
BLAST of CsaV3_3G012110 vs. TrEMBL
Match: tr|A0A0A0L534|A0A0A0L534_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G135060 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.5e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS 60
           MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS
Sbjct: 1   MMLLRLLVPFYSFNWSLNILKSPTEFLDITVWFKINFFTAPSYVQKLAPSCWDHEGGCDS 60

Query: 61  IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC 120
           IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC
Sbjct: 61  IAVGFSILQLISFQEKGNTLMMERGTHRHDQHAFLFSFITQFLPSSINDNLFNKNMETTC 120

Query: 121 RPESVDHFFFGKFHLLTKLIKFIP 145
           RPESVDHFFFGKFHLLTKLIKFIP
Sbjct: 121 RPESVDHFFFGKFHLLTKLIKFIP 144

The following BLAST results are available for this feature:
BLAST of CsaV3_3G012110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56858.12.2e-79100.00hypothetical protein Csa_3G135060 [Cucumis sativus][more]
BLAST of CsaV3_3G012110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G012110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G012110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L534|A0A0A0L534_CUCSA1.5e-79100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G135060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G012110.1CsaV3_3G012110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G012110CsGy3G012090Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G012110Cucumber (Chinese Long) v3cuccucB067
CsaV3_3G012110Cucumber (Chinese Long) v3cuccucB110
CsaV3_3G012110Silver-seed gourdcarcucB0260
CsaV3_3G012110Silver-seed gourdcarcucB0266
CsaV3_3G012110Silver-seed gourdcarcucB0790
CsaV3_3G012110Silver-seed gourdcarcucB0817
CsaV3_3G012110Silver-seed gourdcarcucB1003
CsaV3_3G012110Silver-seed gourdcarcucB1126
CsaV3_3G012110Cucumber (Gy14) v2cgybcucB070
CsaV3_3G012110Cucumber (Gy14) v1cgycucB387
CsaV3_3G012110Cucumber (Gy14) v1cgycucB582
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB0623
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB0709
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G012110Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB0606
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB0695
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G012110Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB0305
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB0901
CsaV3_3G012110Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G012110Wild cucumber (PI 183967)cpicucB088
CsaV3_3G012110Wild cucumber (PI 183967)cpicucB144
CsaV3_3G012110Wild cucumber (PI 183967)cpicucB149
CsaV3_3G012110Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G012110Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G012110Bottle gourd (USVL1VR-Ls)cuclsiB234
CsaV3_3G012110Melon (DHL92) v3.5.1cucmeB215
CsaV3_3G012110Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G012110Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G012110Melon (DHL92) v3.6.1cucmedB209
CsaV3_3G012110Melon (DHL92) v3.6.1cucmedB224
CsaV3_3G012110Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G012110Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G012110Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G012110Watermelon (Charleston Gray)cucwcgB264
CsaV3_3G012110Watermelon (97103) v1cucwmB227
CsaV3_3G012110Watermelon (97103) v1cucwmB239
CsaV3_3G012110Watermelon (97103) v1cucwmB288
CsaV3_3G012110Watermelon (97103) v2cucwmbB206
CsaV3_3G012110Watermelon (97103) v2cucwmbB233
CsaV3_3G012110Watermelon (97103) v2cucwmbB244
CsaV3_3G012110Wax gourdcucwgoB254
CsaV3_3G012110Wax gourdcucwgoB276
CsaV3_3G012110Wax gourdcucwgoB308