CsaV3_3G011420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G011420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 8972763 .. 8973081 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAGTGCGTTTTACAGTGAACAGCAGTATTTTATTGAGTATTGCCCACTAATGGTTAAGGCCCACTTCAATTATCATGAGTTGACCCGTTCTGGCAGAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

mRNA sequence

ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

Coding sequence (CDS)

ATGGGACAAGACATATGGGTAAAAATTGGATACCTCGAGTCCCCACATAACGAACAAACAAAGATATCTAGGCATCTCCCTTTTTATCCCCAACCATGTAGCTCCGGTTCCGGTTCCGATCAAAACTTGATCGACCTCCCAGGATTGGGAAAGGGAGAAAAGGGCACTAATGATCTGGATCTACTGTCAAAGATTCTACAAATTCAAAACTTTCGTGGCCACTAA

Protein sequence

MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLDLLSKILQIQNFRGH
Homology
[Close]
BLAST of CsaV3_3G011420 vs. NCBI nr
Match: KGN56783.1 (hypothetical protein Csa_3G133340 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60
          MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD
Sbjct: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60

Query: 61 LLSKILQIQNFRGH 75
          LLSKILQIQNFRGH
Sbjct: 61 LLSKILQIQNFRGH 74

[Close]
BLAST of CsaV3_3G011420 vs. TrEMBL
Match: tr|A0A0A0L4U2|A0A0A0L4U2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133340 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-37
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60
          MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD
Sbjct: 1  MGQDIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSDQNLIDLPGLGKGEKGTNDLD 60

Query: 61 LLSKILQIQNFRGH 75
          LLSKILQIQNFRGH
Sbjct: 61 LLSKILQIQNFRGH 74

The following BLAST results are available for this feature:
BLAST of CsaV3_3G011420 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56783.11.2e-36100.00hypothetical protein Csa_3G133340 [Cucumis sativus][more]
BLAST of CsaV3_3G011420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G011420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G011420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4U2|A0A0A0L4U2_CUCSA8.0e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133340 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G011420.1CsaV3_3G011420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G011420Lsi05G017970Bottle gourd (USVL1VR-Ls)cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G011420Cucumber (Chinese Long) v3cuccucB067
CsaV3_3G011420Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G011420Silver-seed gourdcarcucB0260
CsaV3_3G011420Silver-seed gourdcarcucB0266
CsaV3_3G011420Silver-seed gourdcarcucB0817
CsaV3_3G011420Silver-seed gourdcarcucB1003
CsaV3_3G011420Silver-seed gourdcarcucB1126
CsaV3_3G011420Cucumber (Gy14) v1cgycucB211
CsaV3_3G011420Cucumber (Gy14) v2cgybcucB070
CsaV3_3G011420Cucumber (Gy14) v2cgybcucB117
CsaV3_3G011420Cucumber (Gy14) v2cgybcucB124
CsaV3_3G011420Cucumber (Gy14) v1cgycucB387
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB0624
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB0709
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G011420Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB0608
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB0695
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G011420Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB0308
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB0901
CsaV3_3G011420Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G011420Wild cucumber (PI 183967)cpicucB088
CsaV3_3G011420Wild cucumber (PI 183967)cpicucB144
CsaV3_3G011420Wild cucumber (PI 183967)cpicucB155
CsaV3_3G011420Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G011420Bottle gourd (USVL1VR-Ls)cuclsiB234
CsaV3_3G011420Melon (DHL92) v3.5.1cucmeB215
CsaV3_3G011420Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G011420Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G011420Melon (DHL92) v3.6.1cucmedB224
CsaV3_3G011420Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G011420Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G011420Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G011420Watermelon (Charleston Gray)cucwcgB264
CsaV3_3G011420Watermelon (97103) v1cucwmB231
CsaV3_3G011420Watermelon (97103) v1cucwmB239
CsaV3_3G011420Watermelon (97103) v1cucwmB288
CsaV3_3G011420Watermelon (97103) v2cucwmbB206
CsaV3_3G011420Watermelon (97103) v2cucwmbB233
CsaV3_3G011420Watermelon (97103) v2cucwmbB244
CsaV3_3G011420Wax gourdcucwgoB254
CsaV3_3G011420Wax gourdcucwgoB282
CsaV3_3G011420Wax gourdcucwgoB308