CsaV3_3G011320 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G011320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 8920249 .. 8920709 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCCCCATATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAGAGGTTGATGGCCCGTTGGAAGACGACTTGTCGTCTCTCCAATCTTGGTGTCGTTTTACGTATAACAACGTGTATGTCGACAATAAAGAGCGTTGGGATATTGTGTTTTTAGTGTAATGTATTAATGAATAAGCTGCTGCACGTGCCAATGCTTTCACAGTTTTTTACACACGGTTAAATTAAGAATCTATCTAAATACAAATTCAACAACTCGTATCTATTTCTCAC

mRNA sequence

ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG

Coding sequence (CDS)

ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG

Protein sequence

MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSGSGSGSGSGGGGSGR
BLAST of CsaV3_3G011320 vs. NCBI nr
Match: KGN56771.1 (hypothetical protein Csa_3G133220 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 7.1e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0

Query: 1  MARPGIFLCILALIIASSFANQQPANV 28
          MARPGIFLCILALIIASSFANQQPANV
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANV 27

BLAST of CsaV3_3G011320 vs. TrEMBL
Match: tr|A0A0A0L9I6|A0A0A0L9I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0

Query: 1  MARPGIFLCILALIIASSFANQQPANV 28
          MARPGIFLCILALIIASSFANQQPANV
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANV 27

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56771.17.1e-05100.00hypothetical protein Csa_3G133220 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L9I6|A0A0A0L9I6_CUCSA4.7e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G011320.1CsaV3_3G011320.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..74

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G011320CSPI03G11210Wild cucumber (PI 183967)cpicucB144
CsaV3_3G011320CsGy3G011260Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G011320Cucumber (Chinese Long) v3cuccucB067
CsaV3_3G011320Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G011320Silver-seed gourdcarcucB0260
CsaV3_3G011320Silver-seed gourdcarcucB0266
CsaV3_3G011320Silver-seed gourdcarcucB0817
CsaV3_3G011320Silver-seed gourdcarcucB1003
CsaV3_3G011320Silver-seed gourdcarcucB1126
CsaV3_3G011320Cucumber (Gy14) v1cgycucB211
CsaV3_3G011320Cucumber (Gy14) v2cgybcucB070
CsaV3_3G011320Cucumber (Gy14) v2cgybcucB124
CsaV3_3G011320Cucumber (Gy14) v1cgycucB387
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB0624
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB0709
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G011320Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB0608
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB0695
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G011320Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB0308
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB0901
CsaV3_3G011320Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G011320Wild cucumber (PI 183967)cpicucB155
CsaV3_3G011320Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G011320Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G011320Bottle gourd (USVL1VR-Ls)cuclsiB234
CsaV3_3G011320Melon (DHL92) v3.5.1cucmeB215
CsaV3_3G011320Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G011320Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G011320Melon (DHL92) v3.6.1cucmedB224
CsaV3_3G011320Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G011320Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G011320Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G011320Watermelon (Charleston Gray)cucwcgB264
CsaV3_3G011320Watermelon (97103) v1cucwmB231
CsaV3_3G011320Watermelon (97103) v1cucwmB239
CsaV3_3G011320Watermelon (97103) v1cucwmB288
CsaV3_3G011320Watermelon (97103) v2cucwmbB206
CsaV3_3G011320Watermelon (97103) v2cucwmbB233
CsaV3_3G011320Watermelon (97103) v2cucwmbB244
CsaV3_3G011320Wax gourdcucwgoB254
CsaV3_3G011320Wax gourdcucwgoB282
CsaV3_3G011320Wax gourdcucwgoB308