CsaV3_3G011220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G011220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 8851710 .. 8852007 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGTAAATAAGATTTATTATTTTCATTTTATTCTTCTATCTTTTGGATGCCATAACGTAACAGATACTATCATACTGAGGCGATGGTTCGTCTCCTGCCCTAGTTTGGTTTTCCTTATGCAGCATATCGCAGCGATGTTAGAAAATAAAAAGTCATATAAAGATTTTTTACTGGATGGCATTGGTTGTCATAGAACGATGCTCTCCCTCTGTATTCTCTCTAATTTTCCCTTCATCTCGTCGTATAGCTTGTTAGAATGTATTGCACTTGAGCTCGGACAGTCGGAAGCGTAA

mRNA sequence

ATGCAAGATACTATCATACTGAGGCGATGGTTCGTCTCCTGCCCTAGTTTGGTTTTCCTTATGCAGCATATCGCAGCGATGTTAGAAAATAAAAAGTCATATAAAGATTTTTTACTGGATGGCATTGGTTGTCATAGAACGATGCTCTCCCTCTGTATTCTCTCTAATTTTCCCTTCATCTCGTCGTATAGCTTGTTAGAATGTATTGCACTTGAGCTCGGACAGTCGGAAGCGTAA

Coding sequence (CDS)

ATGCAAGATACTATCATACTGAGGCGATGGTTCGTCTCCTGCCCTAGTTTGGTTTTCCTTATGCAGCATATCGCAGCGATGTTAGAAAATAAAAAGTCATATAAAGATTTTTTACTGGATGGCATTGGTTGTCATAGAACGATGCTCTCCCTCTGTATTCTCTCTAATTTTCCCTTCATCTCGTCGTATAGCTTGTTAGAATGTATTGCACTTGAGCTCGGACAGTCGGAAGCGTAA

Protein sequence

MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFISSYSLLECIALELGQSEA
Homology
[Close]
BLAST of CsaV3_3G011220 vs. NCBI nr
Match: KGN56761.1 (hypothetical protein Csa_3G133120 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI 60
          MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI
Sbjct: 1  MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI 60

Query: 61 SSYSLLECIALELGQSEA 79
          SSYSLLECIALELGQSEA
Sbjct: 61 SSYSLLECIALELGQSEA 78

[Close]
BLAST of CsaV3_3G011220 vs. TrEMBL
Match: tr|A0A0A0L9H7|A0A0A0L9H7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133120 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI 60
          MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI
Sbjct: 1  MQDTIILRRWFVSCPSLVFLMQHIAAMLENKKSYKDFLLDGIGCHRTMLSLCILSNFPFI 60

Query: 61 SSYSLLECIALELGQSEA 79
          SSYSLLECIALELGQSEA
Sbjct: 61 SSYSLLECIALELGQSEA 78

The following BLAST results are available for this feature:
BLAST of CsaV3_3G011220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56761.12.8e-36100.00hypothetical protein Csa_3G133120 [Cucumis sativus][more]
BLAST of CsaV3_3G011220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G011220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G011220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9H7|A0A0A0L9H7_CUCSA1.9e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133120 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G011220.1CsaV3_3G011220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G011220Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G011220Silver-seed gourdcarcucB0260
CsaV3_3G011220Silver-seed gourdcarcucB0266
CsaV3_3G011220Silver-seed gourdcarcucB0817
CsaV3_3G011220Silver-seed gourdcarcucB1003
CsaV3_3G011220Silver-seed gourdcarcucB1126
CsaV3_3G011220Cucumber (Gy14) v1cgycucB211
CsaV3_3G011220Cucumber (Gy14) v2cgybcucB079
CsaV3_3G011220Cucumber (Gy14) v2cgybcucB117
CsaV3_3G011220Cucumber (Gy14) v2cgybcucB124
CsaV3_3G011220Cucumber (Gy14) v1cgycucB387
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB0624
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB0709
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G011220Cucurbita maxima (Rimu)cmacucB1049
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB0608
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB0695
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G011220Cucurbita moschata (Rifu)cmocucB1032
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB0308
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB0385
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB0901
CsaV3_3G011220Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G011220Wild cucumber (PI 183967)cpicucB093
CsaV3_3G011220Wild cucumber (PI 183967)cpicucB100
CsaV3_3G011220Wild cucumber (PI 183967)cpicucB144
CsaV3_3G011220Wild cucumber (PI 183967)cpicucB155
CsaV3_3G011220Bottle gourd (USVL1VR-Ls)cuclsiB163
CsaV3_3G011220Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G011220Bottle gourd (USVL1VR-Ls)cuclsiB234
CsaV3_3G011220Melon (DHL92) v3.5.1cucmeB232
CsaV3_3G011220Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G011220Melon (DHL92) v3.6.1cucmedB224
CsaV3_3G011220Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G011220Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G011220Watermelon (Charleston Gray)cucwcgB254
CsaV3_3G011220Watermelon (Charleston Gray)cucwcgB264
CsaV3_3G011220Watermelon (97103) v1cucwmB231
CsaV3_3G011220Watermelon (97103) v1cucwmB239
CsaV3_3G011220Watermelon (97103) v1cucwmB288
CsaV3_3G011220Watermelon (97103) v2cucwmbB206
CsaV3_3G011220Watermelon (97103) v2cucwmbB233
CsaV3_3G011220Watermelon (97103) v2cucwmbB244
CsaV3_3G011220Wax gourdcucwgoB254
CsaV3_3G011220Wax gourdcucwgoB281
CsaV3_3G011220Wax gourdcucwgoB308