CsaV3_3G010130 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G010130
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 8162221 .. 8162400 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAATCAACTCCATCCGAATCTCGGCCTACGTGTCGTCTACGGTTTATCTAAAAGGTCAAAGTTACATGTCGTTTTATCAAGACGACATGTAGTTTCAGTGTCAGCTTCCTTCCAAAAACCCACGCTTAGAAGAGCAAACAAACGTAAAGCGCCAAAGCCCGAGTCTGGTAGCTGA

mRNA sequence

ATGACGAATCAACTCCATCCGAATCTCGGCCTACGTGTCGTCTACGGTTTATCTAAAAGGTCAAAGTTACATGTCGTTTTATCAAGACGACATGTAGTTTCAGTGTCAGCTTCCTTCCAAAAACCCACGCTTAGAAGAGCAAACAAACGTAAAGCGCCAAAGCCCGAGTCTGGTAGCTGA

Coding sequence (CDS)

ATGACGAATCAACTCCATCCGAATCTCGGCCTACGTGTCGTCTACGGTTTATCTAAAAGGTCAAAGTTACATGTCGTTTTATCAAGACGACATGTAGTTTCAGTGTCAGCTTCCTTCCAAAAACCCACGCTTAGAAGAGCAAACAAACGTAAAGCGCCAAAGCCCGAGTCTGGTAGCTGA

Protein sequence

MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS
BLAST of CsaV3_3G010130 vs. NCBI nr
Match: KGN56646.1 (hypothetical protein Csa_3G127090 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS 60
          MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS
Sbjct: 1  MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS 59

BLAST of CsaV3_3G010130 vs. TrEMBL
Match: tr|A0A0A0L964|A0A0A0L964_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127090 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS 60
          MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS
Sbjct: 1  MTNQLHPNLGLRVVYGLSKRSKLHVVLSRRHVVSVSASFQKPTLRRANKRKAPKPESGS 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56646.14.6e-23100.00hypothetical protein Csa_3G127090 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L964|A0A0A0L964_CUCSA3.1e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127090 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G010130.1CsaV3_3G010130.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..59

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G010130CSPI03G09980Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G010130Watermelon (97103) v2cucwmbB186
CsaV3_3G010130Watermelon (97103) v2cucwmbB206
CsaV3_3G010130Watermelon (97103) v2cucwmbB229
CsaV3_3G010130Wax gourdcucwgoB263
CsaV3_3G010130Wax gourdcucwgoB273
CsaV3_3G010130Cucumber (Chinese Long) v3cuccucB111
CsaV3_3G010130Cucumber (Chinese Long) v3cuccucB113
CsaV3_3G010130Cucumber (Chinese Long) v3cuccucB137
CsaV3_3G010130Silver-seed gourdcarcucB0260
CsaV3_3G010130Silver-seed gourdcarcucB0652
CsaV3_3G010130Silver-seed gourdcarcucB1003
CsaV3_3G010130Silver-seed gourdcarcucB1124
CsaV3_3G010130Cucumber (Gy14) v2cgybcucB117
CsaV3_3G010130Cucumber (Gy14) v2cgybcucB121
CsaV3_3G010130Cucumber (Gy14) v2cgybcucB269
CsaV3_3G010130Cucumber (Gy14) v1cgycucB387
CsaV3_3G010130Cucumber (Gy14) v1cgycucB489
CsaV3_3G010130Cucumber (Gy14) v1cgycucB553
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB0003
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB0425
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB0971
CsaV3_3G010130Cucurbita maxima (Rimu)cmacucB1057
CsaV3_3G010130Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G010130Cucurbita moschata (Rifu)cmocucB0420
CsaV3_3G010130Cucurbita moschata (Rifu)cmocucB0711
CsaV3_3G010130Wild cucumber (PI 183967)cpicucB148
CsaV3_3G010130Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G010130Cucurbita moschata (Rifu)cmocucB1039
CsaV3_3G010130Cucurbita pepo (Zucchini)cpecucB0153
CsaV3_3G010130Cucurbita pepo (Zucchini)cpecucB0381
CsaV3_3G010130Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G010130Cucurbita pepo (Zucchini)cpecucB0900
CsaV3_3G010130Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G010130Wild cucumber (PI 183967)cpicucB335
CsaV3_3G010130Bottle gourd (USVL1VR-Ls)cuclsiB170
CsaV3_3G010130Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G010130Melon (DHL92) v3.5.1cucmeB179
CsaV3_3G010130Melon (DHL92) v3.5.1cucmeB227
CsaV3_3G010130Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G010130Melon (DHL92) v3.6.1cucmedB170
CsaV3_3G010130Melon (DHL92) v3.6.1cucmedB220
CsaV3_3G010130Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G010130Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G010130Watermelon (Charleston Gray)cucwcgB250
CsaV3_3G010130Watermelon (97103) v1cucwmB199
CsaV3_3G010130Watermelon (97103) v1cucwmB239
CsaV3_3G010130Watermelon (97103) v1cucwmB285