CsaV3_3G007500 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G007500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 6663695 .. 6663948 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTAGTTCAATGTATTGTTTTCATGGTTGTGTATACTGTACTGTTAGTGTTGTTCTCCTTTTCTTGCCTGCATTTTAGTTGATAATTCAGTAGTGAAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

mRNA sequence

ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTATAGTGAAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

Coding sequence (CDS)

ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTATAGTGAAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

Protein sequence

MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP
BLAST of CsaV3_3G007500 vs. NCBI nr
Match: KGN56367.1 (hypothetical protein Csa_3G118020 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 56
          MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP
Sbjct: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 55

BLAST of CsaV3_3G007500 vs. TrEMBL
Match: tr|A0A0A0L6Z5|A0A0A0L6Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118020 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 56
          MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP
Sbjct: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56367.15.7e-23100.00hypothetical protein Csa_3G118020 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L6Z5|A0A0A0L6Z5_CUCSA3.7e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118020 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G007500.1CsaV3_3G007500.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G007500CSPI03G07380Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None