CsaV3_3G006050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G006050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr3 : 5209035 .. 5209288 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGAAGCTTTAGACAAAAAAGAAGCTGACAACTTGCTATGTGAGGTTGACAGTGACAGAAGACTCGCTCTAAAATCAGAGCTTGATATTCTTGATTACAATGAAGCTCGATACTGGTCCCAAAGAGCGAAAAAGTTATGGATTAAGGATGGAGACGAAAGTACCCCTTTCTTCCACAAAGCTTGCACAGCGAGACAGGAAAAAGACCTAACCACAGAAATCATGGATGAAAAGGCGCTATACACAAGATAA

mRNA sequence

ATTGAAGCTTTAGACAAAAAAGAAGCTGACAACTTGCTATGTGAGGTTGACAGTGACAGAAGACTCGCTCTAAAATCAGAGCTTGATATTCTTGATTACAATGAAGCTCGATACTGGTCCCAAAGAGCGAAAAAGTTATGGATTAAGGATGGAGACGAAAGTACCCCTTTCTTCCACAAAGCTTGCACAGCGAGACAGGAAAAAGACCTAACCACAGAAATCATGGATGAAAAGGCGCTATACACAAGATAA

Coding sequence (CDS)

ATTGAAGCTTTAGACAAAAAAGAAGCTGACAACTTGCTATGTGAGGTTGACAGTGACAGAAGACTCGCTCTAAAATCAGAGCTTGATATTCTTGATTACAATGAAGCTCGATACTGGTCCCAAAGAGCGAAAAAGTTATGGATTAAGGATGGAGACGAAAGTACCCCTTTCTTCCACAAAGCTTGCACAGCGAGACAGGAAAAAGACCTAACCACAGAAATCATGGATGAAAAGGCGCTATACACAAGATAA

Protein sequence

IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHKACTARQEKDLTTEIMDEKALYTR

Homology

[Close]

BLAST of CsaV3_3G006050 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           I+++D+ EA+  L E  S RR  LK+++ +  + EA+ W Q++K+LWI +GDE+T FFHK
Sbjct: 148 IDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRLWITEGDENTSFFHK 207

Query: 61  ACTARQEKDLTTEI 75
            C+ARQ + + + I
Sbjct: 208 ICSARQRRSIISNI 221

[Close]

BLAST of CsaV3_3G006050 vs. NCBI nr
Match: XP_019177860.1 (PREDICTED: uncharacterized protein LOC109173056 [Ipomoea nil])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 19  DRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHKACTARQEKDLTTEIMD 77
           D  LA++ EL+IL   E  +W QR+K+LW+K GD +T +FHKA +AR  ++L   + D
Sbjct: 143 DEFLAVEGELEILLQQEEIFWKQRSKQLWLKHGDANTSYFHKAASARCRRNLLVRVKD 200

[Close]

BLAST of CsaV3_3G006050 vs. NCBI nr
Match: OAY81845.1 (hypothetical protein ACMD2_16849 [Ananas comosus])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 27/81 (33.33%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           I+ +D +E  ++L +   D+R+ LKS+L ++   E   W  RAK+ W+K+GD +T FFH 
Sbjct: 23  IQRIDIQEERSILSQEIRDKRIDLKSQLQLILKEEEILWKTRAKQHWLKEGDRNTKFFHA 82

Query: 61  ACTARQEKDLTTEIMDEKALY 82
               R+  ++   I D+   Y
Sbjct: 83  VANGRKRSNMIEFIEDDSGYY 103

[Close]

BLAST of CsaV3_3G006050 vs. NCBI nr
Match: XP_023903785.1 (uncharacterized protein LOC112015598 [Quercus suber])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 23  ALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHKACTARQEKDLTTEIMD 77
           ALK E++ L   EAR WSQR++ LW+K+GD +T FFH   T R +K+L   IMD
Sbjct: 228 ALKEEINSLLDKEARMWSQRSRTLWLKNGDNNTKFFHCRATKRFKKNLICGIMD 281

[Close]

BLAST of CsaV3_3G006050 vs. NCBI nr
Match: XP_019191707.1 (PREDICTED: uncharacterized protein LOC109186235 [Ipomoea nil])

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 18  SDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHKACTARQEKDLTTEIMD 77
           SD  L  + EL++L   E  +W QR+K+LW+K GD +T +FHK  +AR+ ++L   + D
Sbjct: 142 SDELLLARGELELLMQQEEVFWRQRSKQLWMKHGDSNTKYFHKTASARRRRNLLLRVKD 200

[Close]

BLAST of CsaV3_3G006050 vs. TrEMBL
Match: tr|A0A1S4E2K5|A0A1S4E2K5_CUCME (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           I+++D+ EA+  L E  S RR  LK+++ +  + EA+ W Q++K+LWI +GDE+T FFHK
Sbjct: 148 IDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRLWITEGDENTSFFHK 207

Query: 61  ACTARQEKDLTTEI 75
            C+ARQ + + + I
Sbjct: 208 ICSARQRRSIISNI 221

[Close]

BLAST of CsaV3_3G006050 vs. TrEMBL
Match: tr|A0A2N9G973|A0A2N9G973_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27048 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           +E LD+KE+   L   + D R  L  ELD L + E   W Q++K LW+K+GD +T FFHK
Sbjct: 854 LEVLDRKESCGGLSSSERDLRGTLLQELDKLAHFEETSWRQKSKVLWLKEGDNNTKFFHK 913

Query: 61  ACTARQEKDLTTEIMDEKALYT 83
              + + ++   ++  +  LYT
Sbjct: 914 MANSNRRRNFMEKLEVDGILYT 935

[Close]

BLAST of CsaV3_3G006050 vs. TrEMBL
Match: tr|A0A2N9H148|A0A2N9H148_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33614 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           +E L+ KE    L   + D R +L  ELD L + E   W Q++K LW+K+GD +T FFHK
Sbjct: 566 LEVLNSKEMQGGLSSTERDLRGSLLLELDKLAHFEETSWRQKSKVLWLKEGDNNTKFFHK 625

Query: 61  ACTARQEKDLTTEIMDEKALYT 83
              + + ++L  ++  +  LY+
Sbjct: 626 IANSNRRRNLMEKLEVDGILYS 647

[Close]

BLAST of CsaV3_3G006050 vs. TrEMBL
Match: tr|A0A2N9GAK1|A0A2N9GAK1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24474 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           +E L+ KE    L   + D R +L  ELD L + E   W Q++K LW+K+GD +T FFHK
Sbjct: 726 LEVLNSKEMQGGLSSTERDLRGSLLLELDKLAHFEETSWRQKSKVLWLKEGDNNTKFFHK 785

Query: 61  ACTARQEKDLTTEIMDEKALYT 83
              + + ++L  ++  +  LY+
Sbjct: 786 IANSNRRRNLMEKLEVDGILYS 807

[Close]

BLAST of CsaV3_3G006050 vs. TrEMBL
Match: tr|A0A199VYR9|A0A199VYR9_ANACO (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_16849 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-06
Identity = 27/81 (33.33%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1   IEALDKKEADNLLCEVDSDRRLALKSELDILDYNEARYWSQRAKKLWIKDGDESTPFFHK 60
           I+ +D +E  ++L +   D+R+ LKS+L ++   E   W  RAK+ W+K+GD +T FFH 
Sbjct: 23  IQRIDIQEERSILSQEIRDKRIDLKSQLQLILKEEEILWKTRAKQHWLKEGDRNTKFFHA 82

Query: 61  ACTARQEKDLTTEIMDEKALY 82
               R+  ++   I D+   Y
Sbjct: 83  VANGRKRSNMIEFIEDDSGYY 103

The following BLAST results are available for this feature:

BLAST of CsaV3_3G006050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902461.1	2.4e-09	43.24	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
XP_019177860.1	5.5e-06	44.83	PREDICTED: uncharacterized protein LOC109173056 [Ipomoea nil]	[more]
OAY81845.1	7.2e-06	33.33	hypothetical protein ACMD2_16849 [Ananas comosus]	[more]
XP_023903785.1	1.2e-05	51.85	uncharacterized protein LOC112015598 [Quercus suber]	[more]
XP_019191707.1	1.6e-05	40.68	PREDICTED: uncharacterized protein LOC109186235 [Ipomoea nil]	[more]

BLAST of CsaV3_3G006050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G006050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G006050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2K5\|A0A1S4E2K5_CUCME	1.6e-09	43.24	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
tr\|A0A2N9G973\|A0A2N9G973_FAGSY	1.3e-06	36.59	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27048 PE=4 SV=1	[more]
tr\|A0A2N9H148\|A0A2N9H148_FAGSY	4.8e-06	35.37	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33614 PE=4 SV=1	[more]
tr\|A0A2N9GAK1\|A0A2N9GAK1_FAGSY	4.8e-06	35.37	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24474 PE=4 SV=1	[more]
tr\|A0A199VYR9\|A0A199VYR9_ANACO	4.8e-06	33.33	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_16849 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G006050.1	CsaV3_3G006050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G006050	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G006050	Cucumber (Gy14) v1	cgycucB074
CsaV3_3G006050	Cucumber (Gy14) v1	cgycucB175
CsaV3_3G006050	Cucurbita maxima (Rimu)	cmacucB0026
CsaV3_3G006050	Cucurbita maxima (Rimu)	cmacucB0382
CsaV3_3G006050	Cucurbita maxima (Rimu)	cmacucB0837
CsaV3_3G006050	Cucurbita moschata (Rifu)	cmocucB0014
CsaV3_3G006050	Cucurbita moschata (Rifu)	cmocucB0380
CsaV3_3G006050	Cucurbita moschata (Rifu)	cmocucB0822
CsaV3_3G006050	Cucurbita pepo (Zucchini)	cpecucB0258
CsaV3_3G006050	Cucurbita pepo (Zucchini)	cpecucB0491
CsaV3_3G006050	Wild cucumber (PI 183967)	cpicucB031
CsaV3_3G006050	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G006050	Bottle gourd (USVL1VR-Ls)	cuclsiB194
CsaV3_3G006050	Bottle gourd (USVL1VR-Ls)	cuclsiB217
CsaV3_3G006050	Melon (DHL92) v3.5.1	cucmeB248
CsaV3_3G006050	Melon (DHL92) v3.6.1	cucmedB232
CsaV3_3G006050	Watermelon (Charleston Gray)	cucwcgB222
CsaV3_3G006050	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G006050	Watermelon (97103) v1	cucwmB222
CsaV3_3G006050	Watermelon (97103) v1	cucwmB233
CsaV3_3G006050	Watermelon (97103) v2	cucwmbB182
CsaV3_3G006050	Watermelon (97103) v2	cucwmbB203
CsaV3_3G006050	Wax gourd	cucwgoB223
CsaV3_3G006050	Wax gourd	cucwgoB249
CsaV3_3G006050	Cucumber (Chinese Long) v3	cuccucB020
CsaV3_3G006050	Silver-seed gourd	carcucB0248
CsaV3_3G006050	Silver-seed gourd	carcucB0698