CsaV3_3G005430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G005430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 4570631 .. 4571641 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTTCATTTCCCCCAGTTTCACGAAAAAAAACTCTTCTTCTTTCTTTTTCTTCCCCTTCCAATCGCACGATTTCCCTTCTCCACCACATGTCGTCAATTCGCCACAGTGGTTTCGCACATGTCGTCGATTCCCCTTCTCCACCATGCTCTCCGCTCAGTGATAGCTCAAGGTGCTTATTGCGTTAATGCTCCTCTGTGCAATTTTTCCACAGTGAAGGCTTCTCCATCTGATGCCTCTTTGCAATGTTCTTTTCTTCACAACTGTTTCACTCATATCAAAACCCTCCTCCGTCCGCCGTCCCTATGCCCTATCTCACTCATTGCCCTCTCACTCTTCAGACTACCAACCATCTCCTACCTTCATCGTCTGTGGCGGTCTCTCAGGTACTTATGAATCTAATATTTACTCTTCGTACTTTTCTTTGAGTAAGTCATCCTAGAAAAGATAGTTTTATGATATTTGAGTAAAGCTTTAGGATATTTGCAAAAATTGCAAAGTGGTTTCTAGACACAAAATCACATGGTCGAAATTTAAGAGGAATCGAGTTCTTGCTCCTGCCGATTTTTTCAATTAAACTTGAAACTCAATTCTCAACATTGCATCTAAGATATGTTCTTCACAAGTTTCTATATTTATTCCTTAATTTTTCTAGTTTTCTAGCTGCCACTAAGTAAATGAATATTATTTTGTGTTGCCCACCAATTGTTTGATGAAATGTCCATAAAATGACTCATGAAGTTTCTTATTTTAACATGTATCTATGTATGAAATTTTTTTGTTCAAAGTTTTAATAAAGTTGTTTATTATTTTAATAAAGTAGCAATACTTGTTGGGATTATATTTTTTTGCATTCATGCAAAAACTTTCATTAAGCTTAAAGGTTGAGTTATATATTCAACTTAGTTACAATATCATTCTGATAAAATTTTTATACAGATTTAAATTAACGTGTATTTTCATTTGTTAATTGAGATTAATTGGACAGAGCATATATCAGTGAAATGATG

mRNA sequence

ATGTCGTCGATTCCCCTTCTCCACCATGCTCTCCGCTCAGTGATAGCTCAAGGTGCTTATTGCGTTAATGCTCCTCTGTGCAATTTTTCCACAGTGAAGGCTTCTCCATCTGATGCCTCTTTGCAATGTTCTTTTCTTCACAACTGTTTCACTCATATCAAAACCCTCCTCCGTCCGCCGTCCCTATGCCCTATCTCACTCATTGCCCTCTCACTCTTCAGACTACCAACCATCTCCTACCTTCATCGTCTGTGGCGGTCTCTCAGATTAATTGGACAGAGCATATATCAGTGA

Coding sequence (CDS)

ATGTCGTCGATTCCCCTTCTCCACCATGCTCTCCGCTCAGTGATAGCTCAAGGTGCTTATTGCGTTAATGCTCCTCTGTGCAATTTTTCCACAGTGAAGGCTTCTCCATCTGATGCCTCTTTGCAATGTTCTTTTCTTCACAACTGTTTCACTCATATCAAAACCCTCCTCCGTCCGCCGTCCCTATGCCCTATCTCACTCATTGCCCTCTCACTCTTCAGACTACCAACCATCTCCTACCTTCATCGTCTGTGGCGGTCTCTCAGATTAATTGGACAGAGCATATATCAGTGA

Protein sequence

MSSIPLLHHALRSVIAQGAYCVNAPLCNFSTVKASPSDASLQCSFLHNCFTHIKTLLRPPSLCPISLIALSLFRLPTISYLHRLWRSLRLIGQSIYQ
Homology
[Close]
BLAST of CsaV3_3G005430 vs. NCBI nr
Match: XP_011652738.1 (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 3.3e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MSSIPLLHHALRSVIAQGAYCVNAPLCNFSTVKASPSDASLQCSFLHNCFTHIKTLLRPP 60
          MSSIPLLHHALRSVIAQGAYCVNAPLCNFSTVKASPSDASLQCSFLHNCFTHIKTLLRPP
Sbjct: 1  MSSIPLLHHALRSVIAQGAYCVNAPLCNFSTVKASPSDASLQCSFLHNCFTHIKTLLRPP 60

Query: 61 SLCPISLIALSLFRLPTISYLHRLWRSL 89
          SLCPISLIALSLFRLPTISYLHRLWRSL
Sbjct: 61 SLCPISLIALSLFRLPTISYLHRLWRSL 88

[Close]
BLAST of CsaV3_3G005430 vs. NCBI nr
Match: KGN53728.1 (hypothetical protein Csa_4G112620 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 31 TVKASPSDASLQCSFLHNCFTHIKTLLRPPSLCPISLIALSLFRLPTISYLHRLWR 87
          TVKAS SDASLQ SFL N  THIKTLL PPS CP+S  ALSL + P ISYL   WR
Sbjct: 32 TVKASLSDASLQRSFLQNHLTHIKTLLHPPSSCPLSATALSLSKSPAISYLCCQWR 87

[Close]
BLAST of CsaV3_3G005430 vs. TrEMBL
Match: tr|A0A0A0KVX9|A0A0A0KVX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G112620 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.3e-10
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 31 TVKASPSDASLQCSFLHNCFTHIKTLLRPPSLCPISLIALSLFRLPTISYLHRLWR 87
          TVKAS SDASLQ SFL N  THIKTLL PPS CP+S  ALSL + P ISYL   WR
Sbjct: 32 TVKASLSDASLQRSFLQNHLTHIKTLLHPPSSCPLSATALSLSKSPAISYLCCQWR 87

The following BLAST results are available for this feature:
BLAST of CsaV3_3G005430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652738.13.3e-42100.00PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
KGN53728.11.3e-0969.64hypothetical protein Csa_4G112620 [Cucumis sativus][more]
BLAST of CsaV3_3G005430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G005430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G005430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVX9|A0A0A0KVX9_CUCSA8.3e-1069.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G112620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G005430.1CsaV3_3G005430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G005430Silver-seed gourdcarcucB0698
CsaV3_3G005430Silver-seed gourdcarcucB0832
CsaV3_3G005430Cucumber (Gy14) v2cgybcucB117
CsaV3_3G005430Cucumber (Gy14) v1cgycucB046
CsaV3_3G005430Cucurbita maxima (Rimu)cmacucB0026
CsaV3_3G005430Cucurbita maxima (Rimu)cmacucB0382
CsaV3_3G005430Cucurbita maxima (Rimu)cmacucB0837
CsaV3_3G005430Cucurbita moschata (Rifu)cmocucB0014
CsaV3_3G005430Cucurbita moschata (Rifu)cmocucB0372
CsaV3_3G005430Cucurbita moschata (Rifu)cmocucB0822
CsaV3_3G005430Cucurbita pepo (Zucchini)cpecucB0011
CsaV3_3G005430Cucurbita pepo (Zucchini)cpecucB0491
CsaV3_3G005430Wild cucumber (PI 183967)cpicucB144
CsaV3_3G005430Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G005430Melon (DHL92) v3.5.1cucmeB237
CsaV3_3G005430Melon (DHL92) v3.6.1cucmedB234
CsaV3_3G005430Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G005430Watermelon (97103) v1cucwmB204
CsaV3_3G005430Watermelon (97103) v2cucwmbB182
CsaV3_3G005430Wax gourdcucwgoB223