CsaV3_3G004510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 3794589 .. 3794842 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAGAAAGATGGAACTTACGATGGGACGGTTAAGAGAGTTGGAAGGCCAAGCAGAAGCACCACTGCCGGTCAAGCGACCCAAACCGTCGATGAACAAGTTGTTGACATTTTCGATACTAAGCCAATGGTCGCCGATGGCAAATTGCTTATCAGAGGAAGCCAACAGTTCGCCATCAAGCTGTATACGAATGACGCCATGGCATGGACCTTGAAGCAACAATGGCAGAACCAAGAACTTTCCTTGTGCTG

mRNA sequence

ATGCAACAGAAAGATGGAACTTACGATGGGACGGTTAAGAGAGTTGGAAGGCCAAGCAGAAGCACCACTGCCGGTCAAGCGACCCAAACCGTCGATGAACAAGTTGTTGACATTTTCGATACTAAGCCAATGGTCGCCGATGGCAAATTGCTTATCAGAGGAAGCCAACAGTTCGCCATCAAGCTGTATACGAATGACGCCATGGCATGGACCTTGAAGCAACAATGGCAGAACCAAGAACTTTCCTTGTGCTG

Coding sequence (CDS)

ATGCAACAGAAAGATGGAACTTACGATGGGACGGTTAAGAGAGTTGGAAGGCCAAGCAGAAGCACCACTGCCGGTCAAGCGACCCAAACCGTCGATGAACAAGTTGTTGACATTTTCGATACTAAGCCAATGGTCGCCGATGGCAAATTGCTTATCAGAGGAAGCCAACAGTTCGCCATCAAGCTGTATACGAATGACGCCATGGCATGGACCTTGAAGCAACAATGGCAGAACCAAGAACTTTCCTTGTGCTG

Protein sequence

MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAIKLYTNDAMAWTLKQQWQNQELSLCX
Homology
[Close]
BLAST of CsaV3_3G004510 vs. NCBI nr
Match: KGN56063.1 (hypothetical protein Csa_3G063630 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI 60
          MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI
Sbjct: 1  MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI 60

Query: 61 KLYTNDAMAWTLKQQWQNQELSLC 85
          KLYTNDAMAWTLKQQWQNQELSLC
Sbjct: 61 KLYTNDAMAWTLKQQWQNQELSLC 84

[Close]
BLAST of CsaV3_3G004510 vs. TrEMBL
Match: tr|A0A0A0L2V8|A0A0A0L2V8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.7e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI 60
          MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI
Sbjct: 1  MQQKDGTYDGTVKRVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAI 60

Query: 61 KLYTNDAMAWTLKQQWQNQELSLC 85
          KLYTNDAMAWTLKQQWQNQELSLC
Sbjct: 61 KLYTNDAMAWTLKQQWQNQELSLC 84

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56063.11.3e-39100.00hypothetical protein Csa_3G063630 [Cucumis sativus][more]
BLAST of CsaV3_3G004510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2V8|A0A0A0L2V8_CUCSA8.7e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004510.1CsaV3_3G004510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G004510ClCG10G004800Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004510Lsi05G005360Bottle gourd (USVL1VR-Ls)cuclsiB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004510Silver-seed gourdcarcucB0523
CsaV3_3G004510Silver-seed gourdcarcucB0621
CsaV3_3G004510Silver-seed gourdcarcucB0943
CsaV3_3G004510Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004510Cucumber (Gy14) v1cgycucB017
CsaV3_3G004510Cucurbita maxima (Rimu)cmacucB0026
CsaV3_3G004510Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004510Cucurbita maxima (Rimu)cmacucB0969
CsaV3_3G004510Cucurbita moschata (Rifu)cmocucB0014
CsaV3_3G004510Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004510Cucurbita moschata (Rifu)cmocucB0957
CsaV3_3G004510Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004510Cucurbita pepo (Zucchini)cpecucB0968
CsaV3_3G004510Wild cucumber (PI 183967)cpicucB144
CsaV3_3G004510Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004510Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004510Watermelon (Charleston Gray)cucwcgB219
CsaV3_3G004510Watermelon (97103) v1cucwmB204
CsaV3_3G004510Watermelon (97103) v2cucwmbB182
CsaV3_3G004510Wax gourdcucwgoB223