CsaV3_3G004290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNuclear transcription factor Y subunit B
Locationchr3 : 3643113 .. 3643603 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCTGACGACACCAAAGAGACCATCTAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGAGCAAAACCAACAATGCTTGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGAGCAAAACCAACAATGCTTGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

Protein sequence

MSKTNNACFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL
Homology
[Close]
BLAST of CsaV3_3G004290 vs. NCBI nr
Match: KGN56039.1 (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 5.2e-58
Identity = 113/119 (94.96%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MSKTNNACFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 60
           M   N   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI
Sbjct: 103 MPMANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 162

Query: 61  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL
Sbjct: 163 RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of CsaV3_3G004290 vs. NCBI nr
Match: XP_023540511.1 (nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPML 68
           FIT EANERCQREQRKTVT EDVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+L
Sbjct: 127 FITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIL 186

Query: 69  RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RRNVDYGPQVGM+ PYGQ FQIGHVP+GMFDAMGGYY GGG    S+GN +QL
Sbjct: 187 RRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGXXXXSSGNGNQL 239

[Close]
BLAST of CsaV3_3G004290 vs. NCBI nr
Match: XP_023540510.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPML 68
           FIT EANERCQREQRKTVT EDVLWA+GKLGFD+YIEPLTVFLNRYRESES  IRTEP+L
Sbjct: 140 FITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIL 199

Query: 69  RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RRNVDYGPQVGM+ PYGQ FQIGHVP+GMFDAMGGYY GGG    S+GN +QL
Sbjct: 200 RRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGXXXXSSGNGNQL 252

[Close]
BLAST of CsaV3_3G004290 vs. NCBI nr
Match: XP_022932374.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 92/113 (81.42%), Postives = 100/113 (88.50%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPML 68
           FIT EANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLT+FLNRYRESES  +RTEP+L
Sbjct: 116 FITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPIL 175

Query: 69  RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RRNVDY PQVGM+ PYGQAF +GH   GMFDAMGGYYGGG S G S+GN +QL
Sbjct: 176 RRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL 228

[Close]
BLAST of CsaV3_3G004290 vs. NCBI nr
Match: XP_022965151.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 92/113 (81.42%), Postives = 100/113 (88.50%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPML 68
           FIT EANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLT+FLNRYRESES  +RTEP+L
Sbjct: 142 FITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPIL 201

Query: 69  RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RRNVDY PQVGM+ PYGQAF +GH   GMFDAMGGYYGGG S G S+GN +QL
Sbjct: 202 RRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL 254

[Close]
BLAST of CsaV3_3G004290 vs. TAIR10
Match: AT1G21970.1 (Histone superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-22
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-----SIRTE 68
           F+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E     ++R E
Sbjct: 101 FVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGE 160

Query: 69  PMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD 98
           P   R    G  +G   P       G    GM D
Sbjct: 161 PPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLD 194

[Close]
BLAST of CsaV3_3G004290 vs. TAIR10
Match: AT5G47670.1 (nuclear factor Y, subunit B6)

HSP 1 Score: 94.4 bits (233), Expect = 5.2e-20
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 62
           FIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 100 FITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004290 vs. TAIR10
Match: AT2G37060.1 (nuclear factor Y, subunit B8)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-15
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRR 68
           F+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E   T+   + 
Sbjct: 72  FVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG-DTKGSAKG 131

Query: 69  NVDYGPQVGMISPYGQAFQIGH 91
                 + G  S  GQ  Q+ H
Sbjct: 132 GDPNAKKDGQSSQNGQFSQLAH 152

[Close]
BLAST of CsaV3_3G004290 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 59
           F+TSEA+++CQRE+RKT+  +D+LWAM  LGF++YI+PL V+L RYRE E
Sbjct: 71  FVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]
BLAST of CsaV3_3G004290 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 63
           FIT EA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match: sp|Q9SFD8|NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-21
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE-----SIRTE 68
           F+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E     ++R E
Sbjct: 101 FVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGE 160

Query: 69  PMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD 98
           P   R    G  +G   P       G    GM D
Sbjct: 161 PPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLD 194

[Close]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match: sp|Q84W66|NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 9.5e-19
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 62
           FIT EANERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 100 FITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match: sp|Q8VYK4|NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-14
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRR 68
           F+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E   T+   + 
Sbjct: 72  FVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG-DTKGSAKG 131

Query: 69  NVDYGPQVGMISPYGQAFQIGH 91
                 + G  S  GQ  Q+ H
Sbjct: 132 GDPNAKKDGQSSQNGQFSQLAH 152

[Close]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match: sp|Q60EQ4|NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 59
           FITSEA+++CQRE+RKT+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 80  FITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 59
           FITSEA+++CQRE+RKT+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 73  FITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122

[Close]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match: tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-58
Identity = 113/119 (94.96%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MSKTNNACFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 60
           M   N   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI
Sbjct: 103 MPMANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 162

Query: 61  RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL
Sbjct: 163 RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match: tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.3e-44
Identity = 94/111 (84.68%), Postives = 95/111 (85.59%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRR 68
           FITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESIRTEPMLRR
Sbjct: 129 FITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESIRTEPMLRR 188

Query: 69  NVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           NVDYG QVGMISPYGQAFQIG VPAGMFDAMGG              NSQL
Sbjct: 189 NVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGXXXXXXXXXXXXXXNSQL 239

[Close]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match: tr|A0A1S3BKV5|A0A1S3BKV5_CUCME (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.8e-43
Identity = 94/113 (83.19%), Postives = 96/113 (84.96%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPML 68
           FIT EANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+L
Sbjct: 98  FITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIL 157

Query: 69  RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 120
           RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMG             GN SQL
Sbjct: 158 RRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGXXXXXXXXXXXXXGNGSQL 210

[Close]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match: tr|A0A0B0PGM2|A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum OX=29729 GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE----SIRTEP 68
           FIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E    S+R+EP
Sbjct: 104 FITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEP 163

Query: 69  MLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYYGGG 107
           ML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY   G
Sbjct: 164 MLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDG 206

[Close]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match: tr|A0A1U8KSD1|A0A1U8KSD1_GOSHI (nuclear transcription factor Y subunit B-9-like OS=Gossypium hirsutum OX=3635 GN=LOC107920272 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0 

Query: 9   FITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE----SIRTEP 68
           FIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E    S+R+EP
Sbjct: 102 FITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEP 161

Query: 69  MLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYYGGG 107
           ML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY   G
Sbjct: 162 MLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDG 204

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56039.15.2e-5894.96hypothetical protein Csa_3G055940 [Cucumis sativus][more]
XP_023540511.12.1e-4683.19nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023540510.12.1e-4683.19nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp... [more]
XP_022932374.11.1e-4481.42nuclear transcription factor Y subunit B-9-like [Cucurbita moschata][more]
XP_022965151.11.1e-4481.42nuclear transcription factor Y subunit B-9-like [Cucurbita maxima][more]
BLAST of CsaV3_3G004290 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21970.14.3e-2255.32Histone superfamily protein[more]
AT5G47670.15.2e-2081.13nuclear factor Y, subunit B6[more]
AT2G37060.12.3e-1546.34nuclear factor Y, subunit B8[more]
AT3G53340.11.5e-1462.00nuclear factor Y, subunit B10[more]
AT4G14540.11.5e-1457.41nuclear factor Y, subunit B3[more]
BLAST of CsaV3_3G004290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SFD8|NFYB9_ARATH7.7e-2155.32Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q84W66|NFYB6_ARATH9.5e-1981.13Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q8VYK4|NFYB8_ARATH4.1e-1446.34Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q60EQ4|NFYB3_ORYSJ1.2e-1364.00Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39... [more]
sp|P25209|NFYB_MAIZE1.2e-1364.00Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1[more]
BLAST of CsaV3_3G004290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA3.4e-5894.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1[more]
tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA6.3e-4484.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1[more]
tr|A0A1S3BKV5|A0A1S3BKV5_CUCME1.8e-4383.19nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911... [more]
tr|A0A0B0PGM2|A0A0B0PGM2_GOSAR6.1e-3168.57Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum OX... [more]
tr|A0A1U8KSD1|A0A1U8KSD1_GOSHI6.1e-3168.57nuclear transcription factor Y subunit B-9-like OS=Gossypium hirsutum OX=3635 GN... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004290.1CsaV3_3G004290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 18..36
score: 32.06
coord: 37..55
score: 32.06
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 8..71
NoneNo IPR availablePANTHERPTHR11064:SF79NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 8..71
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 5..70
e-value: 4.6E-19
score: 70.5
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 8..63
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 9..35
e-value: 1.8E-7
score: 31.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004290Silver-seed gourdcarcucB0008
CsaV3_3G004290Silver-seed gourdcarcucB0621
CsaV3_3G004290Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004290Cucumber (Gy14) v1cgycucB017
CsaV3_3G004290Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004290Cucurbita maxima (Rimu)cmacucB0659
CsaV3_3G004290Cucurbita maxima (Rimu)cmacucB0974
CsaV3_3G004290Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G004290Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004290Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G004290Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004290Cucurbita pepo (Zucchini)cpecucB0342
CsaV3_3G004290Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G004290Cucurbita pepo (Zucchini)cpecucB1064
CsaV3_3G004290Wild cucumber (PI 183967)cpicucB144
CsaV3_3G004290Bottle gourd (USVL1VR-Ls)cuclsiB175
CsaV3_3G004290Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G004290Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004290Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004290Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004290Watermelon (97103) v1cucwmB210
CsaV3_3G004290Watermelon (97103) v2cucwmbB182
CsaV3_3G004290Wax gourdcucwgoB328
CsaV3_3G004290Wax gourdcucwgoB223