CsaV3_3G004280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNuclear transcription factor Y subunit B
Locationchr3 : 3632231 .. 3632984 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAATTTTCCTATGTATAGACATCAAGGTAGGAAATGAATATGGATATTTCTATGTATATGTTCTCTTGATGAATCTGTATATATATTTGAAGTATTTGTGTTATTCAGGACTGAACATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCTAGCAATAATCAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGCATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGAGAAATTTTCCTATGTATAGACATCAAGGACTGAACATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCTAGCAATAATCAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGCATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGAGAAATTTTCCTATGTATAGACATCAAGGACTGAACATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCTAGCAATAATCAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGCATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA

Protein sequence

MRNFPMYRHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Homology
[Close]
BLAST of CsaV3_3G004280 vs. NCBI nr
Match: KGN56038.1 (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 184/198 (92.93%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 8   RHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLV 67
           R+ GLN MLTPNNPTSIN+NPNTN HLS+GGTSIGNSSATSPLSVAATA+NN+QNQQCLV
Sbjct: 26  RYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLV 85

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT
Sbjct: 86  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 145

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYG 187
           VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESES  IRTEPM RRNVDYG QVGMISPYG
Sbjct: 146 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYG 205

Query: 188 QGFQIGHVPAGMFDAMGG 206
           Q FQIG VPAGMFDAMGG
Sbjct: 206 QAFQIGQVPAGMFDAMGG 221

[Close]
BLAST of CsaV3_3G004280 vs. NCBI nr
Match: XP_008449191.1 (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 168/191 (87.96%), Postives = 176/191 (92.15%), Query Frame = 0 

Query: 14  MMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQDQY 73
           MM+TPN  TSINN PN+NHHLS+GGT+ GNSSATSPLSVA       QNQQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQY 60

Query: 74  MPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDV 133
           MP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 134 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIG 193
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEP+ RRNVDYGPQVGMISPYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 194 HVPAGMFDAMG 205
           HVPAGMFDAMG
Sbjct: 181 HVPAGMFDAMG 191

[Close]
BLAST of CsaV3_3G004280 vs. NCBI nr
Match: KGN56039.1 (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 4.2e-77
Identity = 158/198 (79.80%), Postives = 162/198 (81.82%), Query Frame = 0 

Query: 8   RHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLV 67
           R+  LNMMLTPNNP SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATA+NN+QNQQCLV
Sbjct: 37  RYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLV 96

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQDQYMPMAN                             YISFITSEANERCQREQRKT
Sbjct: 97  REQDQYMPMAN-----------------------------YISFITSEANERCQREQRKT 156

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYG 187
           VTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEPM RRNVDYGPQVGMISPYG
Sbjct: 157 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYG 203

Query: 188 QGFQIGHVPAGMFDAMGG 206
           Q FQIGHVPAGMFDAMGG
Sbjct: 217 QAFQIGHVPAGMFDAMGG 203

[Close]
BLAST of CsaV3_3G004280 vs. NCBI nr
Match: XP_023540511.1 (nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 4.2e-77
Identity = 149/194 (76.80%), Postives = 164/194 (84.54%), Query Frame = 0 

Query: 12  LNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQD 71
           LN++LT N  +S NN  NTNH   +G     NS  T     +  A+NN+Q+QQC+VREQD
Sbjct: 28  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 87

Query: 72  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAE 131
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVT E
Sbjct: 88  QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 147

Query: 132 DVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQ 191
           DVLWA+GKLGFDDYIEPLTVFLNRYRESESDRIRTEP+ RRNVDYGPQVGM+ PYGQ FQ
Sbjct: 148 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 207

Query: 192 IGHVPAGMFDAMGG 206
           IGHVP+GMFDAMGG
Sbjct: 208 IGHVPSGMFDAMGG 221

[Close]
BLAST of CsaV3_3G004280 vs. NCBI nr
Match: XP_023540510.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 4.2e-77
Identity = 149/194 (76.80%), Postives = 164/194 (84.54%), Query Frame = 0 

Query: 12  LNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQD 71
           LN++LT N  +S NN  NTNH   +G     NS  T     +  A+NN+Q+QQC+VREQD
Sbjct: 41  LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 100

Query: 72  QYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAE 131
           QYMP+ANV RIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVT E
Sbjct: 101 QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 160

Query: 132 DVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQ 191
           DVLWA+GKLGFDDYIEPLTVFLNRYRESESDRIRTEP+ RRNVDYGPQVGM+ PYGQ FQ
Sbjct: 161 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 220

Query: 192 IGHVPAGMFDAMGG 206
           IGHVP+GMFDAMGG
Sbjct: 221 IGHVPSGMFDAMGG 234

[Close]
BLAST of CsaV3_3G004280 vs. TAIR10
Match: AT1G21970.1 (Histone superfamily protein)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-46
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 0 

Query: 65  CLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQ 124
           C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETIQECVSEYISF+T EANERCQREQ
Sbjct: 55  CVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQ 114

Query: 125 RKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPMWRRNVDYGPQVG 184
           RKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R    G  +G
Sbjct: 115 RKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIG 174

Query: 185 MISP 186
              P
Sbjct: 175 FHGP 178

[Close]
BLAST of CsaV3_3G004280 vs. TAIR10
Match: AT5G47670.1 (nuclear factor Y, subunit B6)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-45
Identity = 84/107 (78.50%), Postives = 99/107 (92.52%), Query Frame = 0 

Query: 57  SNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEA 116
           ++N   ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT EA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 117 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 164
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004280 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 141.0 bits (354), Expect = 9.1e-34
Identity = 62/99 (62.63%), Postives = 84/99 (84.85%), Query Frame = 0 

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRT 167
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]
BLAST of CsaV3_3G004280 vs. TAIR10
Match: AT2G37060.1 (nuclear factor Y, subunit B8)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 0 

Query: 41  IGNSSATSPLSVAATASNNQQNQQCL-VREQDQYMPMANVIRIMKRILPSHAKISDDTKE 100
           +  S A SP    +  S   Q+ + L VREQD+++P+AN+ RIMKR LP++ KI+ D KE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 101 TIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRES 160
            +QECVSE+ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF+DY+EPL V+L RYRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 161 ESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGH 195
           E D   T+   +       + G  S  GQ  Q+ H
Sbjct: 121 EGD---TKGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]
BLAST of CsaV3_3G004280 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 65/107 (60.75%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 58  NNQQNQQCL-VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEA 117
           NNQ  Q  L  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T EA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 118 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 164
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match: sp|Q9SFD8|NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.8e-45
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 0 

Query: 65  CLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQ 124
           C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETIQECVSEYISF+T EANERCQREQ
Sbjct: 55  CVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQ 114

Query: 125 RKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR---IRTEPMWRRNVDYGPQVG 184
           RKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE E+DR   +R EP   R    G  +G
Sbjct: 115 RKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIG 174

Query: 185 MISP 186
              P
Sbjct: 175 FHGP 178

[Close]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match: sp|Q84W66|NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 5.4e-44
Identity = 84/107 (78.50%), Postives = 99/107 (92.52%), Query Frame = 0 

Query: 57  SNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEA 116
           ++N   ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT EA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 117 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 164
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 62/99 (62.63%), Postives = 84/99 (84.85%), Query Frame = 0 

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRT 167
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 0 

Query: 67  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRK 126
           VREQD+++P+AN+ RIMK+ +P++ KI+ D KET+QECVSE+ISFITSEA+++CQRE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 127 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESD 163
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 65/107 (60.75%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 58  NNQQNQQCL-VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEA 117
           NNQ  Q  L  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T EA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 118 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 164
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match: tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.8e-96
Identity = 184/198 (92.93%), Postives = 189/198 (95.45%), Query Frame = 0 

Query: 8   RHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLV 67
           R+ GLN MLTPNNPTSIN+NPNTN HLS+GGTSIGNSSATSPLSVAATA+NN+QNQQCLV
Sbjct: 26  RYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLV 85

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT
Sbjct: 86  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 145

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYG 187
           VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESES  IRTEPM RRNVDYG QVGMISPYG
Sbjct: 146 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYG 205

Query: 188 QGFQIGHVPAGMFDAMGG 206
           Q FQIG VPAGMFDAMGG
Sbjct: 206 QAFQIGQVPAGMFDAMGG 221

[Close]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match: tr|A0A1S3BKV5|A0A1S3BKV5_CUCME (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 9.2e-89
Identity = 168/191 (87.96%), Postives = 176/191 (92.15%), Query Frame = 0 

Query: 14  MMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQDQY 73
           MM+TPN  TSINN PN+NHHLS+GGT+ GNSSATSPLSVA       QNQQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAXXXXXXXQNQQCVVREQDQY 60

Query: 74  MPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDV 133
           MP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 134 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIG 193
           LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEP+ RRNVDYGPQVGMISPYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 194 HVPAGMFDAMG 205
           HVPAGMFDAMG
Sbjct: 181 HVPAGMFDAMG 191

[Close]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match: tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.8e-77
Identity = 158/198 (79.80%), Postives = 162/198 (81.82%), Query Frame = 0 

Query: 8   RHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLV 67
           R+  LNMMLTPNNP SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATA+NN+QNQQCLV
Sbjct: 37  RYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLV 96

Query: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127
           REQDQYMPMAN                             YISFITSEANERCQREQRKT
Sbjct: 97  REQDQYMPMAN-----------------------------YISFITSEANERCQREQRKT 156

Query: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYG 187
           VTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEPM RRNVDYGPQVGMISPYG
Sbjct: 157 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYG 203

Query: 188 QGFQIGHVPAGMFDAMGG 206
           Q FQIGHVPAGMFDAMGG
Sbjct: 217 QAFQIGHVPAGMFDAMGG 203

[Close]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match: tr|A0A2P5SND0|A0A2P5SND0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 114/155 (73.55%), Postives = 134/155 (86.45%), Query Frame = 0 

Query: 56  ASNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSE 115
           A++N     C+VREQDQYMP+ANVIRIM+RILP+HAKISDD KETIQECVSEYISFIT E
Sbjct: 27  ANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGE 86

Query: 116 ANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--IRTEPMWRRN 175
           ANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EPM +R 
Sbjct: 87  ANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRG 146

Query: 176 VDYGPQVGMISPYGQGFQIGHVPAGMFD---AMGG 206
           +DYGP + M++PYG GF +GH   G+FD   AMGG
Sbjct: 147 IDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGG 179

[Close]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match: tr|A0A0B0PGM2|A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum OX=29729 GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 112/146 (76.71%), Postives = 130/146 (89.04%), Query Frame = 0 

Query: 65  CLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQ 124
           C+VREQDQYMP+ANVIRIM+RILP+HAKISDD KETIQECVSEYISFIT EANERCQREQ
Sbjct: 58  CMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQ 117

Query: 125 RKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR--IRTEPMWRRNVDYGPQVGM 184
           RKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYRE+E++R  +R+EPM +R +DYGP + M
Sbjct: 118 RKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-M 177

Query: 185 ISPYGQGFQIGHVPAGMFD---AMGG 206
           ++PYG GF +GH   G+FD   AMGG
Sbjct: 178 MAPYGAGFHVGH-QQGIFDGATAMGG 201

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56038.11.2e-9592.93hypothetical protein Csa_3G049440 [Cucumis sativus][more]
XP_008449191.11.4e-8887.96PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
KGN56039.14.2e-7779.80hypothetical protein Csa_3G055940 [Cucumis sativus][more]
XP_023540511.14.2e-7776.80nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp... [more]
XP_023540510.14.2e-7776.80nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp... [more]
BLAST of CsaV3_3G004280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21970.12.1e-4670.97Histone superfamily protein[more]
AT5G47670.13.0e-4578.50nuclear factor Y, subunit B6[more]
AT4G14540.19.1e-3462.63nuclear factor Y, subunit B3[more]
AT2G37060.11.2e-3348.39nuclear factor Y, subunit B8[more]
AT5G47640.11.2e-3360.75nuclear factor Y, subunit B2[more]
BLAST of CsaV3_3G004280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SFD8|NFYB9_ARATH3.8e-4570.97Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|Q84W66|NFYB6_ARATH5.4e-4478.50Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|O23310|NFYB3_ARATH1.6e-3262.63Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
sp|P25209|NFYB_MAIZE1.6e-3263.54Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1[more]
sp|Q9FGJ3|NFYB2_ARATH2.1e-3260.75Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF... [more]
BLAST of CsaV3_3G004280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2U1|A0A0A0L2U1_CUCSA7.8e-9692.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=4 SV=1[more]
tr|A0A1S3BKV5|A0A1S3BKV5_CUCME9.2e-8987.96nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911... [more]
tr|A0A0A0L4W1|A0A0A0L4W1_CUCSA2.8e-7779.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=4 SV=1[more]
tr|A0A2P5SND0|A0A2P5SND0_GOSBA1.2e-5673.55Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD02503 PE=4 SV... [more]
tr|A0A0B0PGM2|A0A0B0PGM2_GOSAR2.1e-5676.71Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum OX... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004280.1CsaV3_3G004280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 101..119
score: 47.73
coord: 120..138
score: 32.06
coord: 139..157
score: 31.46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..49
NoneNo IPR availablePANTHERPTHR11064:SF79NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 36..164
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 36..164
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 61..174
e-value: 1.4E-40
score: 140.3
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 70..163
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 73..137
e-value: 8.3E-25
score: 86.8
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 104..120

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004280Silver-seed gourdcarcucB0008
CsaV3_3G004280Silver-seed gourdcarcucB0621
CsaV3_3G004280Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004280Cucumber (Gy14) v1cgycucB017
CsaV3_3G004280Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004280Cucurbita maxima (Rimu)cmacucB0659
CsaV3_3G004280Cucurbita maxima (Rimu)cmacucB0974
CsaV3_3G004280Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G004280Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004280Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G004280Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004280Cucurbita pepo (Zucchini)cpecucB0342
CsaV3_3G004280Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G004280Cucurbita pepo (Zucchini)cpecucB1064
CsaV3_3G004280Wild cucumber (PI 183967)cpicucB144
CsaV3_3G004280Bottle gourd (USVL1VR-Ls)cuclsiB175
CsaV3_3G004280Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G004280Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004280Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004280Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004280Watermelon (97103) v1cucwmB210
CsaV3_3G004280Watermelon (97103) v2cucwmbB182
CsaV3_3G004280Wax gourdcucwgoB328
CsaV3_3G004280Wax gourdcucwgoB223