CsaV3_3G004180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G004180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 3538440 .. 3538748 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTCCCAAAACGATACAAAACGTGAAACCCAGTATCGATTTGAGAAGAAAAAGAAGCTAAAGAAGAGAGTTTCTTTTGTTGCTCGTCGAAGGGAGCTTCAATTGAAAATGGGTATTTCAAATTAAATTCAGACAAATTTTGTATCAGAGAATAGTCAGAGACGCATGAAGGTGGGGGAGAAGAAAGGAAGAAATGAAGAAGAGGCAATATCCTCTACAATGTCCTCCATGCTGACGCGTGATCATCGCTGTGATTTTACCAAAAAGTATTTATCTTTTACACCTAATAATGGACAATCATGA

mRNA sequence

ATGGGGTATTCCCAAAACGATACAAAACGTGAAACCCAGTATCGATTTGAGAAGAAAAAGAAGCTAAAGAAGAGAGTTTCTTTTGTTGCTCGTCGAAGGGAGCTTCAATTGAAAATGGAGAATAGTCAGAGACGCATGAAGGTGGGGGAGAAGAAAGGAAGAAATGAAGAAGAGGCAATATCCTCTACAATGTCCTCCATGCTGACGCGTGATCATCGCTGTGATTTTACCAAAAAGTATTTATCTTTTACACCTAATAATGGACAATCATGA

Coding sequence (CDS)

ATGGGGTATTCCCAAAACGATACAAAACGTGAAACCCAGTATCGATTTGAGAAGAAAAAGAAGCTAAAGAAGAGAGTTTCTTTTGTTGCTCGTCGAAGGGAGCTTCAATTGAAAATGGAGAATAGTCAGAGACGCATGAAGGTGGGGGAGAAGAAAGGAAGAAATGAAGAAGAGGCAATATCCTCTACAATGTCCTCCATGCTGACGCGTGATCATCGCTGTGATTTTACCAAAAAGTATTTATCTTTTACACCTAATAATGGACAATCATGA

Protein sequence

MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAISSTMSSMLTRDHRCDFTKKYLSFTPNNGQS
Homology
[Close]
BLAST of CsaV3_3G004180 vs. NCBI nr
Match: KGN56030.1 (hypothetical protein Csa_3G047905 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI 60
          MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI
Sbjct: 1  MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI 60

Query: 61 SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS 91
          SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS
Sbjct: 61 SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS 90

[Close]
BLAST of CsaV3_3G004180 vs. TrEMBL
Match: tr|A0A0A0L278|A0A0A0L278_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047905 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.1e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI 60
          MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI
Sbjct: 1  MGYSQNDTKRETQYRFEKKKKLKKRVSFVARRRELQLKMENSQRRMKVGEKKGRNEEEAI 60

Query: 61 SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS 91
          SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS
Sbjct: 61 SSTMSSMLTRDHRCDFTKKYLSFTPNNGQS 90

The following BLAST results are available for this feature:
BLAST of CsaV3_3G004180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56030.11.1e-39100.00hypothetical protein Csa_3G047905 [Cucumis sativus][more]
BLAST of CsaV3_3G004180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G004180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L278|A0A0A0L278_CUCSA7.1e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047905 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G004180.1CsaV3_3G004180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G004180CSPI03G04190Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G004180Silver-seed gourdcarcucB0008
CsaV3_3G004180Silver-seed gourdcarcucB0621
CsaV3_3G004180Silver-seed gourdcarcucB0622
CsaV3_3G004180Cucumber (Gy14) v2cgybcucB117
CsaV3_3G004180Cucumber (Gy14) v1cgycucB017
CsaV3_3G004180Cucurbita maxima (Rimu)cmacucB0375
CsaV3_3G004180Cucurbita maxima (Rimu)cmacucB0381
CsaV3_3G004180Cucurbita maxima (Rimu)cmacucB0659
CsaV3_3G004180Cucurbita maxima (Rimu)cmacucB0974
CsaV3_3G004180Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G004180Cucurbita moschata (Rifu)cmocucB0375
CsaV3_3G004180Cucurbita moschata (Rifu)cmocucB0378
CsaV3_3G004180Cucurbita moschata (Rifu)cmocucB0960
CsaV3_3G004180Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G004180Cucurbita pepo (Zucchini)cpecucB0249
CsaV3_3G004180Cucurbita pepo (Zucchini)cpecucB0256
CsaV3_3G004180Cucurbita pepo (Zucchini)cpecucB0342
CsaV3_3G004180Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G004180Cucurbita pepo (Zucchini)cpecucB1064
CsaV3_3G004180Bottle gourd (USVL1VR-Ls)cuclsiB175
CsaV3_3G004180Bottle gourd (USVL1VR-Ls)cuclsiB217
CsaV3_3G004180Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G004180Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G004180Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G004180Watermelon (97103) v1cucwmB210
CsaV3_3G004180Watermelon (97103) v2cucwmbB182
CsaV3_3G004180Wax gourdcucwgoB328
CsaV3_3G004180Wax gourdcucwgoB223