CsaV3_3G003760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G003760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Location	chr3 : 3177195 .. 3180036 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGACGGCCATTCTAACAGCCTGGTACACTAAAATTATTTACTCTGGCAAAATTATACTTCAATGTTTGATGCATGTCTAAAGCTTAATAATCTAAATTAAACATGATCTTTGAAGCTCTCGATTGAAACTTCTTATTATGCCTTGTGGTTATGGTTTCTCGATGAACCTGGGATTGGGGTGGAGAAAAAAGAGGATTTAACAAGTATCTAACCACACTGAAAGATGATTTATCCCAAGTACTTGATCATGGTACTCGGTCTGGGATCTTTACTGTTCATGCCAATCTGTTTTTAGTAGACGAGCTAAATATGCAAGTAATCTAGCTAGCCAGTGAGTCAGGTCTACGATTATCGTTTTCTCTTTGGAAGTCTTAGTTTTTTTTTTCTTGTCAGGGATAGTTTTTGCATTCTATCTATGGAAAAGGAGGATTGTCGTTTTTCTACTCTTGCTACACAAACATGTAACTGTGGAGCATTATTGCAGCTCTTTACTTTTTTCACCTTACCTGCTTTCAACTTTTGGTATACTGAAATTATATTTGTTCCCCATCAGTTACTACAGGAGAATGGAATTGTTCAGTCGGGACTCTTTTTATTACATTATATTTCATGCCCCTTTATCTCCGTCCTCAGTTTTTTCCTCGTGTCGAAACTGTCAAGGATTATAAGTTCAAGTTACAAGCTTTTGAATATGGCTTCTCTTGAAGCTGTTTTAGCTTGTAACAAAAAAATTAGCTCTTTCAATCTCTTAGTTCAGTGGCTGAATGCTTAAAAAGGTTGTATTATTTTGTATCTAGATACATATCTTAGAATCAGATGATTTGAAGATTAAGAACATATTTATTGTTCTTACTACTAGGAGTTTGTTAATGCCTTGAAACGTTCGACTCCTAAAGCAAAAAATAATGTTGTGTAGAAGAGATCTTCTATGTTTCCTGTTCCTGTTTTGGTCATTGTATTAATTATTGTAAGTACCAGTACTACAATCCGCTGAAACAAGCACAGAGAATTAAGTTGTTATCTATGTGATTTGATTTCGCCCTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCATATGTGATTTTGTTTATGGCAAAGGGAGCTACTTATAATTGTGACTTCCAAGTAAGAATAATAAACGTAGATGGTTTGTTCTTACTTTTTAAACTTTGCAAACATTAGAATTTAAAAATGAAAAAAAAAAGAAAATTACAATCCAAACCAACCCATATTTTATGGTTTGGGTTGAGTTGAAAACTTAATTCGGGTTGCCAACCCAACTAACCCGAAAATATGGGTTGGGTTGAGAATATCTCCCAACCCAACCCGTTTATACCCCTAGTTCGAATTCGTAAAAAAATTGAAAAATTTAGTGCTAGATTTTAGTTTTGTTCCCCTGTTTCCTTTATTTTAGTGAGTGATTTGAATCTGATTATATAACCATTTTAATATTTTGTTTTACACTTTTTCAAAGGTAATTCTGAATGATTTGAAGGTGTTTTTTTGTGTGTGATTATTGTTTGTTAGTTTTTATATATATTGAAAGTTTGATGTTTTGCTGGATCGGGAAAAGGAGTTTTCTTTACAGATTACTCAAATTTAGTTTCATTAATGTCAGTGACATGAATTTTTTAAAAATAATGAAAACTAATATTAGACACTCTCAACATCTATTAGTTTGACCAGATTTGGATTATCCGTAAAGAAAAAACACTCTCGGCGAAATGAGTATCGGTTGTTTTTGTTAAGAAGCATGGTAGAAAGCAAATTATTAGACACTCAACATCAATTTGTTTGAAACACTATAATATTTGGTGCAGCAATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTGAACCATTTTGAAGATTTTTACACATAATGTGCATATGTATTTAAACTTATCTTGAGTTCTGGACTGATTTCTAATTTTTTTAATATATATATATATATATATATATATGACTATTAATCTACATACTAATCT

mRNA sequence

ATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Coding sequence (CDS)

ATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAGGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAGATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Protein sequence

MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF

Homology

[Close]

BLAST of CsaV3_3G003760 vs. NCBI nr
Match: XP_004148278.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypothetical protein Csa_3G043930 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 1.5e-136
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CsaV3_3G003760 vs. NCBI nr
Match: XP_008448982.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_008448983.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 489.2 bits (1258), Expect = 8.2e-135
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CsaV3_3G003760 vs. NCBI nr
Match: XP_008439941.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 472.2 bits (1214), Expect = 1.0e-129
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 242

[Close]

BLAST of CsaV3_3G003760 vs. NCBI nr
Match: XP_022149571.1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia] >XP_022149572.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia])

HSP 1 Score: 388.3 bits (996), Expect = 2.0e-104
Identity = 189/243 (77.78%), Postives = 218/243 (89.71%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M +S+GPSSLKRKRPD    +SSGGALI  EKVLYDLICSKQSMGI   D+KRETK+A+S
Sbjct: 1   MSRSQGPSSLKRKRPD----SSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADS 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           +VTKSLK+LQ KG+IK+V+HYQNKGKKFYLS DFEP+KELTGGNWY +G+LD++YINTLK
Sbjct: 61  IVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
             C RMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQI+EIVNALVLDN+VMEVKS+G GE
Sbjct: 121 GFCGRMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F+FIPIGKICYK C   GG+KGEPKTGAMASIPCGVCPRI++CTPNG+ISP TCVYYTKW
Sbjct: 181 FDFIPIGKICYK-CYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKW 238

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 238

[Close]

BLAST of CsaV3_3G003760 vs. NCBI nr
Match: XP_022946967.1 (DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata] >XP_023532566.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 184/243 (75.72%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M +S+GPSSLKRKRP+    +  GGALI  EKVLYDLICSKQSMGI   DMKRETK+ ++
Sbjct: 1   MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YI+TLK
Sbjct: 61  VVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
             CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GE
Sbjct: 121 GFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F+FIP+GKICYK  +   G+KGEPKTGAMAS PCGVCPRI +CTPNGIISP TCVYYTKW
Sbjct: 181 FDFIPVGKICYK--SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKW 239

Query: 241 LDF 244
           L+F
Sbjct: 241 LEF 239

[Close]

BLAST of CsaV3_3G003760 vs. TAIR10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases)

HSP 1 Score: 204.1 bits (518), Expect = 9.6e-53
Identity = 110/235 (46.81%), Postives = 148/235 (62.98%), Query Frame = 0


Query: 11  KRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ 70
           KRKRPD   K+S G      EK L DLI   Q  G   F++KRE     ++VT+ + SL+
Sbjct: 3   KRKRPD--PKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLR 62

Query: 71  TKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ-- 130
            K LIK V +  NKG K YL+ +FEP  ELTGG WY DG LD   I  LK  C  +++  
Sbjct: 63  KKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERH 122

Query: 131 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 190
           R++++T+E +   F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    IG+
Sbjct: 123 RQRVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGE 182

Query: 191 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +CY+   +  G  GEP+ GA ASIPCGVCP I  C+P+G+ISP TCVY+ KWLDF
Sbjct: 183 VCYRLTGKKFG-NGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

[Close]

BLAST of CsaV3_3G003760 vs. Swiss-Prot
Match: sp|Q921X6|RPC6_MOUSE (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-23
Identity = 72/232 (31.03%), Postives = 117/232 (50.43%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++   SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG + + PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PILPPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CsaV3_3G003760 vs. Swiss-Prot
Match: sp|Q2T9S3|RPC6_BOVIN (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-23
Identity = 72/232 (31.03%), Postives = 114/232 (49.14%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +  +        P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVS-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CsaV3_3G003760 vs. Swiss-Prot
Match: sp|Q9H1D9|RPC6_HUMAN (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-23
Identity = 72/232 (31.03%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CsaV3_3G003760 vs. Swiss-Prot
Match: sp|Q9VD25|RPC6_DROME (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 63/230 (27.39%), Postives = 104/230 (45.22%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           +EKV+Y ++    + GI   D++ ++      + K LK+L+TK LIK V+      KK Y
Sbjct: 79  EEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVY 138

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK-----------------L 149
           +  + EP   +TGG WY+D + + ++++ L Q C R +Q K+                  
Sbjct: 139 MLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSC 198

Query: 150 MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYK 209
            T+  + +     G  KV L+   +E I+  +V D     V+    G F +  +      
Sbjct: 199 CTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD-GSFVYRAVNAPL-- 258

Query: 210 YCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLD 243
                      P TG +  +PCG+CP I  C+  G ++  TC Y   WLD
Sbjct: 259 -----------PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of CsaV3_3G003760 vs. Swiss-Prot
Match: sp|O94553|RPC6_SCHPO (Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc6 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 67/234 (28.63%), Postives = 102/234 (43.59%), Query Frame = 0


Query: 29  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKF 88
           G E+++Y  I +  + GI    +   T    SVV + LKSL++K L+K ++  +N  +K 
Sbjct: 85  GDEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKI 144

Query: 89  YLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKL---------------- 148
           Y+  D  P+ ELTGG W+ D ELD ++I  LK+V  R +  K                  
Sbjct: 145 YMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPE 204

Query: 149 ----MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 208
                T   I    + +   KV+LS   +  +V+ L+ D +V E +S G   +  I +  
Sbjct: 205 YNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKV-EKRSDG-ASYRAIRV-- 264

Query: 209 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLD 243
                              A    PCG CP    C  N  ++P TC Y  KWL+
Sbjct: 265 -------------NNENIDAFTESPCGNCPVSDICDANSRVNPITCEYLDKWLN 301

[Close]

BLAST of CsaV3_3G003760 vs. TrEMBL
Match: tr|A0A0A0L5W6|A0A0A0L5W6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 9.9e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CsaV3_3G003760 vs. TrEMBL
Match: tr|A0A1S3BL06|A0A1S3BL06_CUCME (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 5.4e-135
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CsaV3_3G003760 vs. TrEMBL
Match: tr|A0A1S3AZZ6|A0A1S3AZZ6_CUCME (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC103484577 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 6.9e-130
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 242

[Close]

BLAST of CsaV3_3G003760 vs. TrEMBL
Match: tr|A0A2I4FE30|A0A2I4FE30_9ROSI (DNA-directed RNA polymerase III subunit RPC6 OS=Juglans regia OX=51240 GN=LOC108997974 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 3.6e-78
Identity = 145/243 (59.67%), Postives = 188/243 (77.37%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GPS LKRKRPD    NS   +L   E++LYDLI SKQ M I T DMKRET   ++
Sbjct: 1   MSRLQGPSLLKRKRPD---SNSPSVSLTEHERLLYDLIQSKQDMAIWTRDMKRETNLPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTK LIK V + QNKG+K Y++ +FEP+ E+TGG WY +G LD ++IN LK
Sbjct: 61  VVTKSLKSLQTKKLIKEVVNIQNKGRKHYIATEFEPSTEITGGTWYAEGNLDTEFINFLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           + C ++I  +K+ T+EG++++ ++S AF +E + +Q+EEIVN LVLDN++MEVKS+G GE
Sbjct: 121 KHCVKIIYEQKVATLEGVLDTIRRSRAFNIEFTTQQVEEIVNVLVLDNEIMEVKSNGIGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F  IP+G++CY  CT  GG KGEPK GAMASIPCGVCPRI+ CTP+GIISP TCVY++KW
Sbjct: 181 FGSIPVGRVCYT-CTNKGGNKGEPKIGAMASIPCGVCPRISLCTPDGIISPKTCVYFSKW 239

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 239

[Close]

BLAST of CsaV3_3G003760 vs. TrEMBL
Match: tr|A0A2I4FJS8|A0A2I4FJS8_9ROSI (DNA-directed RNA polymerase III subunit RPC6 OS=Juglans regia OX=51240 GN=LOC108999462 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 143/243 (58.85%), Postives = 189/243 (77.78%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M + +GPS LKRKRPD    N+  G+L   E++LYDLI SKQ M I T DMKRET   ++
Sbjct: 1   MSRLQGPSPLKRKRPD---SNTPSGSLTEHERLLYDLIRSKQDMAIWTRDMKRETNLPDN 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTK LIK V + QNKG+K Y++ +FEP+ E+TGG WY +G LD ++IN LK
Sbjct: 61  VVTKSLKSLQTKKLIKEVVNIQNKGRKHYIATEFEPSMEITGGTWYAEGNLDTEFINFLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           + C ++I  +K+ T+EGI+++ ++S AF VE + +Q+EEIVN+LVLDN++MEVKS+G GE
Sbjct: 121 KHCVKIIYEQKVTTLEGILDTIRRSRAFNVEFTSQQVEEIVNSLVLDNEIMEVKSNGIGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           F+ IP+G++CY   ++G    GEPK GAMASIPCGVCP+I+ CTP+GIISP TCVY+TKW
Sbjct: 181 FDSIPVGRVCYTCASKGN--NGEPKIGAMASIPCGVCPQISLCTPDGIISPKTCVYFTKW 238

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 238

The following BLAST results are available for this feature:

BLAST of CsaV3_3G003760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148278.1	1.5e-136	100.00	PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55...	[more]
XP_008448982.1	8.2e-135	98.77	PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_...	[more]
XP_008439941.1	1.0e-129	96.30	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]	[more]
XP_022149571.1	2.0e-104	77.78	DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia] >X...	[more]
XP_022946967.1	2.9e-100	75.72	DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata] >XP_023532566....	[more]

BLAST of CsaV3_3G003760 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23710.1	9.6e-53	46.81	DNA binding;DNA-directed RNA polymerases	[more]

BLAST of CsaV3_3G003760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q921X6\|RPC6_MOUSE	2.6e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
sp\|Q2T9S3\|RPC6_BOVIN	3.4e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
sp\|Q9H1D9\|RPC6_HUMAN	5.8e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
sp\|Q9VD25\|RPC6_DROME	1.6e-20	27.39	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]
sp\|O94553\|RPC6_SCHPO	6.0e-20	28.63	Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pom...	[more]

BLAST of CsaV3_3G003760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5W6\|A0A0A0L5W6_CUCSA	9.9e-137	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=4 SV=1	[more]
tr\|A0A1S3BL06\|A0A1S3BL06_CUCME	5.4e-135	98.77	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3AZZ6\|A0A1S3AZZ6_CUCME	6.9e-130	96.30	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2I4FE30\|A0A2I4FE30_9ROSI	3.6e-78	59.67	DNA-directed RNA polymerase III subunit RPC6 OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2I4FJS8\|A0A2I4FJS8_9ROSI	1.8e-77	58.85	DNA-directed RNA polymerase III subunit RPC6 OS=Juglans regia OX=51240 GN=LOC108...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR016049	RNA_pol_Rpc34-like
IPR036388	WH-like_DNA-bd_sf
IPR007832	RNA_pol_Rpc34

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006359	regulation of transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0001056	RNA polymerase III activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G003760.1	CsaV3_3G003760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 29..135 e-value: 4.4E-26 score: 92.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 29..93 e-value: 1.2E-14 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 10..243
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 30..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G003760	CSPI03G03700	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G003760	Cucsa.041640	Cucumber (Gy14) v1	cgycucB017
CsaV3_3G003760	CsGy3G003710	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G003760	Cla004424	Watermelon (97103) v1	cucwmB210
CsaV3_3G003760	MELO3C014058	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G003760	ClCG00G001180	Watermelon (Charleston Gray)	cucwcgB180
CsaV3_3G003760	ClCG10G003800	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G003760	MELO3C014058.2	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G003760	Cla97C10G188340	Watermelon (97103) v2	cucwmbB182
CsaV3_3G003760	Bhi11G000319	Wax gourd	cucwgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G003760	Silver-seed gourd	carcucB0014
CsaV3_3G003760	Silver-seed gourd	carcucB0905
CsaV3_3G003760	Cucurbita maxima (Rimu)	cmacucB0381
CsaV3_3G003760	Cucurbita maxima (Rimu)	cmacucB0975
CsaV3_3G003760	Cucurbita moschata (Rifu)	cmocucB0378
CsaV3_3G003760	Cucurbita moschata (Rifu)	cmocucB0961
CsaV3_3G003760	Cucurbita pepo (Zucchini)	cpecucB0256
CsaV3_3G003760	Cucurbita pepo (Zucchini)	cpecucB1047
CsaV3_3G003760	Bottle gourd (USVL1VR-Ls)	cuclsiB250