CsaV3_3G002670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G002670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 2155622 .. 2156186 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCATGCCCAATGGCTCTGTTAATCTAACAGACAAGTGTGGTGGAAATGGCCTTCGATCGATTAATATTGTGAGTCTTGTAGATACAAGAGAAATTATCTAAAAACGACCGAAGCTTAATTGTGTTGTTCCTACGGCCAATTTGGATAAGGAGAACTCCGATTATTCAATACCGAAATTCGTTCCCTACAAAACTCAATTAGAGCAGGTCTATTCTTATATGGATGCAATCAGAAACGACTAGTCTCAGAGACATTCAAACAAAACAGTAAGAGATAATAGAAATCCTAACGAATATAAACAGCAAATAAATCCATCGATGAGTTCATCCAAGCTAAATACAGATATTGCACTCAAATAACAGAATAAATTCTCCGGGTTATGGGCGATTATTAGCTAGTAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGATGTGATAAATCCAACGATGACTGGGGAGGCGATTACACTAGGAGAAGGCTTATTGCAACTTGCGATCAGTGTGGACGTTGGTTTGATCTGCGATTAGATGAACAATATCTTGATTAG

mRNA sequence

ATGTTGTTCATGCCCAATGGCTCTGTTAATCTAACAGACAAGTGTGGTGGAAATGGCCTTCGATCGATTAATATTGAGAACTCCGATTATTCAATACCGAAATTCGTTCCCTACAAAACTCAATTAGAGCAGATATTGCACTCAAATAACAGAATAAATTCTCCGGGTTATGGGCGATTATTAGCTAGTAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGATGTGATAAATCCAACGATGACTGGGGAGGCGATTACACTAGGAGAAGGCTTATTGCAACTTGCGATCAGTGTGGACGTTGGTTTGATCTGCGATTAGATGAACAATATCTTGATTAG

Coding sequence (CDS)

ATGTTGTTCATGCCCAATGGCTCTGTTAATCTAACAGACAAGTGTGGTGGAAATGGCCTTCGATCGATTAATATTGAGAACTCCGATTATTCAATACCGAAATTCGTTCCCTACAAAACTCAATTAGAGCAGATATTGCACTCAAATAACAGAATAAATTCTCCGGGTTATGGGCGATTATTAGCTAGTAAACTGAAATTTACTTACCTCGATGTCGAAATCATGCTCCGATGTGATAAATCCAACGATGACTGGGGAGGCGATTACACTAGGAGAAGGCTTATTGCAACTTGCGATCAGTGTGGACGTTGGTTTGATCTGCGATTAGATGAACAATATCTTGATTAG

Protein sequence

MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRLLASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD
Homology
[Close]
BLAST of CsaV3_3G002670 vs. NCBI nr
Match: KGN55859.1 (hypothetical protein Csa_3G019990 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.0e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60
           MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL
Sbjct: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60

Query: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD 116
           LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD
Sbjct: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD 115

[Close]
BLAST of CsaV3_3G002670 vs. TrEMBL
Match: tr|A0A0A0L482|A0A0A0L482_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019990 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60
           MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL
Sbjct: 1   MLFMPNGSVNLTDKCGGNGLRSINIENSDYSIPKFVPYKTQLEQILHSNNRINSPGYGRL 60

Query: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD 116
           LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD
Sbjct: 61  LASKLKFTYLDVEIMLRCDKSNDDWGGDYTRRRLIATCDQCGRWFDLRLDEQYLD 115

The following BLAST results are available for this feature:
BLAST of CsaV3_3G002670 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55859.14.0e-63100.00hypothetical protein Csa_3G019990 [Cucumis sativus][more]
BLAST of CsaV3_3G002670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L482|A0A0A0L482_CUCSA2.6e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G002670.1CsaV3_3G002670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G002670CSPI03G02640Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G002670Wax gourdcucwgoB232
CsaV3_3G002670Wax gourdcucwgoB260
CsaV3_3G002670Cucumber (Chinese Long) v3cuccucB124
CsaV3_3G002670Silver-seed gourdcarcucB0449
CsaV3_3G002670Silver-seed gourdcarcucB0567
CsaV3_3G002670Cucumber (Gy14) v2cgybcucB117
CsaV3_3G002670Cucumber (Gy14) v1cgycucB465
CsaV3_3G002670Cucumber (Gy14) v1cgycucB499
CsaV3_3G002670Cucurbita maxima (Rimu)cmacucB0372
CsaV3_3G002670Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G002670Cucurbita moschata (Rifu)cmocucB0371
CsaV3_3G002670Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G002670Cucurbita pepo (Zucchini)cpecucB0246
CsaV3_3G002670Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G002670Bottle gourd (USVL1VR-Ls)cuclsiB172
CsaV3_3G002670Bottle gourd (USVL1VR-Ls)cuclsiB250
CsaV3_3G002670Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G002670Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G002670Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G002670Watermelon (Charleston Gray)cucwcgB211
CsaV3_3G002670Watermelon (97103) v1cucwmB205
CsaV3_3G002670Watermelon (97103) v1cucwmB273
CsaV3_3G002670Watermelon (97103) v2cucwmbB178
CsaV3_3G002670Watermelon (97103) v2cucwmbB182