CsaV3_3G002210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G002210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 1780503 .. 1780752 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGGAAGAAGAAGAAGAAGTAAACGGAATGGGTTGTGATCGAATCGAGGTTTATAGAGATTATGAAAGGGTTTTAGGCATGGAGGAAACAGCGGAAAATTGGAGGAGAAACAGGTAGATTTAGATTGTGCTATAAATTTCTGGTTGATTCTTGGAACAGAGGAAATGAGAAGAAGGATGATGGAAGTGCCATTTGGATTAGAGTGAGTGGGAGAGAAAGCGCCAAAGCAAAAACAAGATTATAA

mRNA sequence

ATGGGTAAGGAAGAAGAAGAAGAAGTAAACGGAATGGGTTGTGATCGAATCGAGGTTTATAGAGATTATGAAAGGGTTTTAGGCATGGAGGAAACAGCGGAAAATTGGAGGAGAAACAGAGGAAATGAGAAGAAGGATGATGGAAGTGCCATTTGGATTAGAGTGAGTGGGAGAGAAAGCGCCAAAGCAAAAACAAGATTATAA

Coding sequence (CDS)

ATGGGTAAGGAAGAAGAAGAAGAAGTAAACGGAATGGGTTGTGATCGAATCGAGGTTTATAGAGATTATGAAAGGGTTTTAGGCATGGAGGAAACAGCGGAAAATTGGAGGAGAAACAGAGGAAATGAGAAGAAGGATGATGGAAGTGCCATTTGGATTAGAGTGAGTGGGAGAGAAAGCGCCAAAGCAAAAACAAGATTATAA

Protein sequence

MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRESAKAKTRL
Homology
[Close]
BLAST of CsaV3_3G002210 vs. NCBI nr
Match: KGN55814.1 (hypothetical protein Csa_3G017080 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES 60
          MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES
Sbjct: 1  MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES 60

Query: 61 AKAKTRL 68
          AKAKTRL
Sbjct: 61 AKAKTRL 67

[Close]
BLAST of CsaV3_3G002210 vs. TrEMBL
Match: tr|A0A0A0L444|A0A0A0L444_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017080 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES 60
          MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES
Sbjct: 1  MGKEEEEEVNGMGCDRIEVYRDYERVLGMEETAENWRRNRGNEKKDDGSAIWIRVSGRES 60

Query: 61 AKAKTRL 68
          AKAKTRL
Sbjct: 61 AKAKTRL 67

The following BLAST results are available for this feature:
BLAST of CsaV3_3G002210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55814.11.3e-29100.00hypothetical protein Csa_3G017080 [Cucumis sativus][more]
BLAST of CsaV3_3G002210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G002210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L444|A0A0A0L444_CUCSA8.5e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G002210.1CsaV3_3G002210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G002210CSPI03G02180Wild cucumber (PI 183967)cpicucB144
CsaV3_3G002210Cucsa.321400Cucumber (Gy14) v1cgycucB499
CsaV3_3G002210CsGy3G002080Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G002210Cucumber (Chinese Long) v3cuccucB109
CsaV3_3G002210Cucumber (Chinese Long) v3cuccucB113
CsaV3_3G002210Silver-seed gourdcarcucB0599
CsaV3_3G002210Silver-seed gourdcarcucB0745
CsaV3_3G002210Silver-seed gourdcarcucB0821
CsaV3_3G002210Cucumber (Gy14) v2cgybcucB119
CsaV3_3G002210Cucumber (Gy14) v1cgycucB488
CsaV3_3G002210Cucurbita maxima (Rimu)cmacucB0297
CsaV3_3G002210Cucurbita maxima (Rimu)cmacucB0372
CsaV3_3G002210Cucurbita maxima (Rimu)cmacucB0620
CsaV3_3G002210Cucurbita maxima (Rimu)cmacucB0718
CsaV3_3G002210Cucurbita maxima (Rimu)cmacucB0975
CsaV3_3G002210Cucurbita moschata (Rifu)cmocucB0288
CsaV3_3G002210Cucurbita moschata (Rifu)cmocucB0371
CsaV3_3G002210Cucurbita moschata (Rifu)cmocucB0705
CsaV3_3G002210Cucurbita moschata (Rifu)cmocucB0961
CsaV3_3G002210Cucurbita pepo (Zucchini)cpecucB0246
CsaV3_3G002210Cucurbita pepo (Zucchini)cpecucB0764
CsaV3_3G002210Cucurbita pepo (Zucchini)cpecucB0895
CsaV3_3G002210Cucurbita pepo (Zucchini)cpecucB1047
CsaV3_3G002210Cucurbita pepo (Zucchini)cpecucB1063
CsaV3_3G002210Wild cucumber (PI 183967)cpicucB147
CsaV3_3G002210Wild cucumber (PI 183967)cpicucB151
CsaV3_3G002210Bottle gourd (USVL1VR-Ls)cuclsiB237
CsaV3_3G002210Bottle gourd (USVL1VR-Ls)cuclsiB244
CsaV3_3G002210Bottle gourd (USVL1VR-Ls)cuclsiB250
CsaV3_3G002210Melon (DHL92) v3.5.1cucmeB222
CsaV3_3G002210Melon (DHL92) v3.5.1cucmeB244
CsaV3_3G002210Melon (DHL92) v3.5.1cucmeB246
CsaV3_3G002210Melon (DHL92) v3.6.1cucmedB215
CsaV3_3G002210Melon (DHL92) v3.6.1cucmedB231
CsaV3_3G002210Melon (DHL92) v3.6.1cucmedB243
CsaV3_3G002210Watermelon (Charleston Gray)cucwcgB184
CsaV3_3G002210Watermelon (Charleston Gray)cucwcgB194
CsaV3_3G002210Watermelon (Charleston Gray)cucwcgB232
CsaV3_3G002210Watermelon (97103) v1cucwmB193
CsaV3_3G002210Watermelon (97103) v1cucwmB209
CsaV3_3G002210Watermelon (97103) v1cucwmB249
CsaV3_3G002210Watermelon (97103) v2cucwmbB182
CsaV3_3G002210Watermelon (97103) v2cucwmbB255
CsaV3_3G002210Wax gourdcucwgoB242