CsaV3_2G035700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G035700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 23955655 .. 23955907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTTCAGTTTGAAGAGGATAAAGCCTTGAGGTTGAGACAACTGTACATGGGCGATAGGTCCAATATGAATGGGTCGAAGTTGGACAAAGAGTACCCGACTTCAATTTTGAGAGCGATGAGGATGCTGTGAAAATCTCACTTTTTTTATTTTATCGAATTGGCCATGATGGGTAGAGAGAGGCGAATCAACACATGGACTAGACCGTGTTAGGCCTCATAGACGACTTGGAGCACTTCGTGAGCTATGA

mRNA sequence

ATGTTCGTTCAGTTTGAAGAGGATAAAGCCTTGAGGTTGAGACAACTGTACATGGGCGATAGGTCCAATATGAATGGGTCGAAGTTGGACAAAGAGTACCCGACTTCAATTTTGAGAGCGATGAGGATGCTGCCTCATAGACGACTTGGAGCACTTCGTGAGCTATGA

Coding sequence (CDS)

ATGTTCGTTCAGTTTGAAGAGGATAAAGCCTTGAGGTTGAGACAACTGTACATGGGCGATAGGTCCAATATGAATGGGTCGAAGTTGGACAAAGAGTACCCGACTTCAATTTTGAGAGCGATGAGGATGCTGCCTCATAGACGACTTGGAGCACTTCGTGAGCTATGA

Protein sequence

MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL

Homology

[Close]

BLAST of CsaV3_2G035700 vs. NCBI nr
Match: KGN63325.1 (hypothetical protein Csa_2G428980 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL 56
          MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL
Sbjct: 1  MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL 55

[Close]

BLAST of CsaV3_2G035700 vs. NCBI nr
Match: KGN57895.1 (hypothetical protein Csa_3G379230 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-05
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 3  VQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPT 36
          ++F +DKALRLRQLY+GDRSNMNG +LDK+Y T
Sbjct: 6  IEFVDDKALRLRQLYLGDRSNMNGLELDKDYLT 38

[Close]

BLAST of CsaV3_2G035700 vs. TrEMBL
Match: tr|A0A0A0LN40|A0A0A0LN40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL 56
          MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL
Sbjct: 1  MFVQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPTSILRAMRMLPHRRLGALREL 55

[Close]

BLAST of CsaV3_2G035700 vs. TrEMBL
Match: tr|A0A0A0L7D5|A0A0A0L7D5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379230 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-05
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 3  VQFEEDKALRLRQLYMGDRSNMNGSKLDKEYPT 36
          ++F +DKALRLRQLY+GDRSNMNG +LDK+Y T
Sbjct: 6  IEFVDDKALRLRQLYLGDRSNMNGLELDKDYLT 38

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63325.1	6.3e-22	100.00	hypothetical protein Csa_2G428980 [Cucumis sativus]	[more]
KGN57895.1	9.1e-05	72.73	hypothetical protein Csa_3G379230 [Cucumis sativus]	[more]

BLAST of CsaV3_2G035700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LN40\|A0A0A0LN40_CUCSA	4.1e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428980 PE=4 SV=1	[more]
tr\|A0A0A0L7D5\|A0A0A0L7D5_CUCSA	6.0e-05	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379230 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035700.1	CsaV3_2G035700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G035700	CSPI02G27130	Wild cucumber (PI 183967)	cpicucB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G035700	Silver-seed gourd	carcucB0997
CsaV3_2G035700	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G035700	Cucumber (Gy14) v1	cgycucB069
CsaV3_2G035700	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G035700	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G035700	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G035700	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G035700	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G035700	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G035700	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G035700	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G035700	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G035700	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G035700	Watermelon (97103) v1	cucwmB156
CsaV3_2G035700	Watermelon (97103) v2	cucwmbB125
CsaV3_2G035700	Wax gourd	cucwgoB180