CsaV3_2G035540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G035540
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 23830173 .. 23830839 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCGTCAATAATATCACAGAAGAGGACCATTTGGCTTTGGCTTCTCATAGAGCCTCCCTTCTTTTCCTCAACAACAAAAATTTCATTGAAATCCTTGCAAAGGATCTTAGGGTGATTCAACGTCCTTTTCAGAATCCTAAGCAATTTCCAAGTTTCCTTCTAGTTCTATTTGGTTGGATTACCATACACCCCGCTAAATCTCCAAGGTTCATTATCATCAACAATTATAACATCAATATATGGCCTTAGGAAAAAGATGATATGATAAGCAAAGACTTTTGAAGCCACAACAATATCAGGCTTCCACTATTACCTCTACTTAGCACAATAAAGCAGCAATCAAACCTCAACACTCACTCAACTTTCTCGCTAATCAAATTTTCACACATGGTCTCAGAAAAAATGATAACTTGAGGATTTTCCCATTTGACTATATTTCAAAGGGCATTGAGTGTTCAAGAGTTTTCTAATCCTTAAACGTTCTAACATAGAATAATCATGGGGTTTGGTGGGGCTGACTTTCAGCCTCCGCCGATATCCTTCCAGAAACCATGGAGTAATTGGTTATGCCTTTCTTCTTTTTTTCCTCTGTGTCGCTGTTCTTGGATTCATGTTGTATGTCATGGTTCACCTTTTCAATTTGATTATGATCAATACCTGA

mRNA sequence

ATGGAACTCGTCAATAATATCACAGAAGAGGACCATTTGGCTTTGGCTTCTCATAGAGCCTCCCTTCTTTTCCTCAACAACAAAAATTTCATTGAAATCCTTGCAAAGGATCTTAGGGTGATTCAACGTCCTTTTCAGAATCCTAAGCAATTTCCAAGTTTCCTTCTAGTTCTATTTGGTTGGATTACCATACACCCCGCTAAATCTCCAAGCCTCCGCCGATATCCTTCCAGAAACCATGGAGTAATTGGTTATGCCTTTCTTCTTTTTTTCCTCTGTGTCGCTGTTCTTGGATTCATGTTGTATGTCATGGTTCACCTTTTCAATTTGATTATGATCAATACCTGA

Coding sequence (CDS)

ATGGAACTCGTCAATAATATCACAGAAGAGGACCATTTGGCTTTGGCTTCTCATAGAGCCTCCCTTCTTTTCCTCAACAACAAAAATTTCATTGAAATCCTTGCAAAGGATCTTAGGGTGATTCAACGTCCTTTTCAGAATCCTAAGCAATTTCCAAGTTTCCTTCTAGTTCTATTTGGTTGGATTACCATACACCCCGCTAAATCTCCAAGCCTCCGCCGATATCCTTCCAGAAACCATGGAGTAATTGGTTATGCCTTTCTTCTTTTTTTCCTCTGTGTCGCTGTTCTTGGATTCATGTTGTATGTCATGGTTCACCTTTTCAATTTGATTATGATCAATACCTGA

Protein sequence

MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFGWITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT
Homology
[Close]
BLAST of CsaV3_2G035540 vs. NCBI nr
Match: KGN63307.1 (hypothetical protein Csa_2G427320 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 7.3e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG 60
           MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG
Sbjct: 1   MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG 60

Query: 61  WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT 116
           WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT
Sbjct: 61  WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT 115

[Close]
BLAST of CsaV3_2G035540 vs. TrEMBL
Match: tr|A0A0A0LR66|A0A0A0LR66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427320 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.8e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG 60
           MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG
Sbjct: 1   MELVNNITEEDHLALASHRASLLFLNNKNFIEILAKDLRVIQRPFQNPKQFPSFLLVLFG 60

Query: 61  WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT 116
           WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT
Sbjct: 61  WITIHPAKSPSLRRYPSRNHGVIGYAFLLFFLCVAVLGFMLYVMVHLFNLIMINT 115

The following BLAST results are available for this feature:
BLAST of CsaV3_2G035540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63307.17.3e-57100.00hypothetical protein Csa_2G427320 [Cucumis sativus][more]
BLAST of CsaV3_2G035540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G035540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G035540 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LR66|A0A0A0LR66_CUCSA4.8e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G035540.1CsaV3_2G035540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G035540CSPI02G27000Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G035540Silver-seed gourdcarcucB0997
CsaV3_2G035540Cucumber (Gy14) v2cgybcucB065
CsaV3_2G035540Cucumber (Gy14) v1cgycucB069
CsaV3_2G035540Cucurbita maxima (Rimu)cmacucB0653
CsaV3_2G035540Cucurbita maxima (Rimu)cmacucB0703
CsaV3_2G035540Cucurbita moschata (Rifu)cmocucB0639
CsaV3_2G035540Cucurbita moschata (Rifu)cmocucB0689
CsaV3_2G035540Cucurbita pepo (Zucchini)cpecucB0337
CsaV3_2G035540Cucurbita pepo (Zucchini)cpecucB0881
CsaV3_2G035540Bottle gourd (USVL1VR-Ls)cuclsiB105
CsaV3_2G035540Melon (DHL92) v3.5.1cucmeB103
CsaV3_2G035540Melon (DHL92) v3.6.1cucmedB096
CsaV3_2G035540Watermelon (Charleston Gray)cucwcgB138
CsaV3_2G035540Watermelon (97103) v1cucwmB156
CsaV3_2G035540Watermelon (97103) v2cucwmbB125
CsaV3_2G035540Wax gourdcucwgoB180
CsaV3_2G035540Wax gourdcucwgoB191
CsaV3_2G035540Cucumber (Chinese Long) v3cuccucB096
CsaV3_2G035540Silver-seed gourdcarcucB0444